RetrogeneDB ID: | retro_pabe_1298 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 15:54404699..54405142(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS13 | ||
Ensembl ID: | ENSPPYG00000003456 | ||
Aliases: | None | ||
Description: | ribosomal protein S13 [Source:HGNC Symbol;Acc:10386] |
Percent Identity: | 81.58 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLT-PSQIGVILRDSHGVAQVRFVTGN |
.G..HAP.KGLSQSAL.Y..S.PTWLKLTSD.VKEQIY.L.KKGLT...QIGVILRD.HG.AQVRFV.G. | |
Retrocopy | IGCTHAPRKGLSQSALLYHHSIPTWLKLTSDNVKEQIYELTKKGLT<SPQIGVILRD*HGAAQVRFVAG- |
Parental | KILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNW |
...RILKSKGLAPDLPEDLYHLIKKAVAV.KHLER.RKDKDAKF.LILIESRIHRLARYYK.KRVLPP.W | |
Retrocopy | --IRILKSKGLAPDLPEDLYHLIKKAVAVQKHLERSRKDKDAKFFLILIESRIHRLARYYKIKRVLPPSW |
Parental | KYESSTASALVA |
KYE.STAS.LVA | |
Retrocopy | KYEPSTASVLVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 55 .79 RPM |
SRP007412_cerebellum | 0 .00 RPM | 116 .62 RPM |
SRP007412_heart | 0 .00 RPM | 114 .36 RPM |
SRP007412_kidney | 0 .10 RPM | 124 .83 RPM |
SRP007412_liver | 0 .00 RPM | 128 .71 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1574 |