RetrogeneDB ID: | retro_mmus_1526 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 16:68164456..68164705(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps13 | ||
Ensembl ID: | ENSMUSG00000090862 | ||
Aliases: | Rps13, 2700063M04Rik | ||
Description: | ribosomal protein S13 [Source:MGI Symbol;Acc:MGI:1915302] |
Percent Identity: | 57.65 % |
Parental protein coverage: | 54.97 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | NKILRILK-SKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAK-FRLILIESRIHRLARYYKTKRVLP |
NK.LRILK..K...PDL.EDL.HLI.K...V..HLERN..DK......L.LIESRIH..A.Y.K.....P | |
Retrocopy | NKTLRILK>TKRPCPDLSEDLQHLIMKVLSVITHLERNISDKEIN<LGLLLIESRIHQSACYCKSEQDIP |
Parental | PNWKYESSTASALVA |
.NWKYESSTAS...A | |
Retrocopy | TNWKYESSTASSPMA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 36 .17 RPM |
SRP007412_cerebellum | 0 .00 RPM | 19 .84 RPM |
SRP007412_heart | 0 .00 RPM | 43 .08 RPM |
SRP007412_kidney | 0 .00 RPM | 34 .61 RPM |
SRP007412_liver | 0 .00 RPM | 31 .90 RPM |
SRP007412_testis | 0 .00 RPM | 43 .50 RPM |