RetrogeneDB ID: | retro_ecab_822 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 4:94422290..94422709(-) | ||
Located in intron of: | ENSECAG00000014211 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS13 | ||
Ensembl ID: | ENSECAG00000014928 | ||
Aliases: | None | ||
Description: | ribosomal protein S13 [Source:HGNC Symbol;Acc:10386] |
Percent Identity: | 79.43 % |
Parental protein coverage: | 92.72 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNK |
M.R...PGKGLS.SALP.RR..P.WLK.TSDDVK.QIYKLAKKGL.PSQIG..LRDSHGVAQV.FVTGNK | |
Retrocopy | MSRVRTPGKGLSHSALPCRRRMPAWLKVTSDDVKGQIYKLAKKGLAPSQIGMVLRDSHGVAQVCFVTGNK |
Parental | ILRILKSKGLAPDLPEDLYHLIKKAVAVR-KHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNW |
ILRILKSKGLAPDLPE.L.HL.KKAVAV..KHLE.NRK.KDAKF.LILIESR.H.LA.YYKTK.V.P.NW | |
Retrocopy | ILRILKSKGLAPDLPEHL*HLMKKAVAVE<KHLEKNRKHKDAKFCLILIESRNHQLAQYYKTK*VPPHNW |
Parental | K |
K | |
Retrocopy | K |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .06 RPM | 562 .67 RPM |
SRP021940_cerebellum | 0 .00 RPM | 255 .77 RPM |
SRP021940_embryo | 0 .03 RPM | 354 .97 RPM |
SRP021940_placental_villous | 0 .00 RPM | 260 .67 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 341 .42 RPM |
SRP021940_testis | 0 .00 RPM | 157 .43 RPM |