RetrogeneDB ID: | retro_chof_2359 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_68043:387..702(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS13 | ||
Ensembl ID: | ENSCHOG00000008721 | ||
Aliases: | None | ||
Description: | ribosomal protein S13 [Source:HGNC Symbol;Acc:10386] |
Percent Identity: | 75.7 % |
Parental protein coverage: | 75. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | QIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERN |
.IYKL.KKGLTPS...VILRDSHGV.QV.FVTGNKILR.LKSKGLAP.LPE..YHLIKKAV...K.L.RN | |
Retrocopy | KIYKLGKKGLTPSLMNVILRDSHGVTQVCFVTGNKILRVLKSKGLAPHLPENFYHLIKKAVVFGKRL*RN |
Parental | R-KDKDAKFRLILIESRIHRLARYYKTKRVLP-PNWK |
R.KDKD..F.LIL.ES.IH.LA.YYKTK.VLP.PNWK | |
Retrocopy | R<KDKDT*FCLILTES*IHQLAQYYKTK*VLP>PNWK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |