RetrogeneDB ID: | retro_mmus_2906 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 7:25875326..25875624(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps13 | ||
Ensembl ID: | ENSMUSG00000090862 | ||
Aliases: | Rps13, 2700063M04Rik | ||
Description: | ribosomal protein S13 [Source:MGI Symbol;Acc:MGI:1915302] |
Percent Identity: | 63.46 % |
Parental protein coverage: | 67.55 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | KLTSDDVKEQIYKLAKKGLTPSQIGVILRDSH-GVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKA |
.LTSD..KEQIYKL...GLTPSQI.VI.RDSH..VA.V.FVT.NK.LRI.KSK.L...LP.DL.HL.K.A | |
Retrocopy | QLTSDGKKEQIYKLTALGLTPSQISVIQRDSH<CVALVHFVTSNKTLRIFKSK*LT--LPKDLHHLVKEA |
Parental | VAVR-KHLERNRKDKDAKFRLILIESRIHRLARY |
..VR...LERNRKDK.A.F..IL..SRI..LA.. | |
Retrocopy | ITVR<QRLERNRKDKYAMFCQILTGSRIYQLAHW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 36 .17 RPM |
SRP007412_cerebellum | 0 .00 RPM | 19 .84 RPM |
SRP007412_heart | 0 .00 RPM | 43 .08 RPM |
SRP007412_kidney | 0 .00 RPM | 34 .61 RPM |
SRP007412_liver | 0 .00 RPM | 31 .90 RPM |
SRP007412_testis | 0 .00 RPM | 43 .50 RPM |