RetrogeneDB ID: | retro_btau_784 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 19:11556432..11556726(-) | ||
Located in intron of: | ENSBTAG00000012068 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS13 | ||
Ensembl ID: | ENSBTAG00000040308 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S13 [Source:UniProtKB/Swiss-Prot;Acc:Q56JX8] |
Percent Identity: | 78.43 % |
Parental protein coverage: | 64.9 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | GRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAK-KGLTP-SQIGVI-LRDSHGVAQVRFV-T |
GRMHAP..GLSQSA.PY..S.PTWLKLT.DDVKEQIYK.A..K.LTP.SQI.VI.LRDSHGV.QV.FV.. | |
Retrocopy | GRMHAPRRGLSQSAQPYCQSIPTWLKLTADDVKEQIYKRANMKSLTP<SQICVI<LRDSHGVTQVCFV<E |
Parental | GNKILRILKSKGLAPDLPEDLYHLIKKAVAVR |
GNKILR.LK.KGLAPDLPEDLYHLIKKA.A.R | |
Retrocopy | GNKILRTLKCKGLAPDLPEDLYHLIKKAAAIR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 93 .87 RPM |
ERP005899_muscle | 0 .00 RPM | 575 .35 RPM |
SRP017611_brain | 0 .00 RPM | 33 .21 RPM |
SRP017611_kidney | 0 .00 RPM | 99 .40 RPM |
SRP017611_liver | 0 .00 RPM | 82 .00 RPM |
SRP030211_testis | 0 .01 RPM | 36 .04 RPM |