RetrogeneDB ID: | retro_dord_397 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_161600:482..928(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps13 | ||
Ensembl ID: | ENSDORG00000002507 | ||
Aliases: | None | ||
Description: | ribosomal protein S13 [Source:MGI Symbol;Acc:MGI:1915302] |
Percent Identity: | 75.66 % |
Parental protein coverage: | 98.01 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MGRMHAPG-KGLSQSALPYRRS-VPTWLKLTSEDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTG |
MG..HAPG.KGLSQ.ALP...S.V.TWLKL.SED.KEQ.Y.L.KKGLTPSQIG..LRDSHGVA.V.FV.G | |
Retrocopy | MGCRHAPG<KGLSQLALP*CHSRVTTWLKLMSEDMKEQTYILPKKGLTPSQIGGTLRDSHGVAHVHFVIG |
Parental | NKILRILK-SKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLP- |
NKILRI....KGL..DLP..LYH.IKKA.AVRKH.ERNRKDK..KF.LILIES.IH.LARYYKTKRVLP. | |
Retrocopy | NKILRISR<TKGLFLDLPKALYHVIKKAIAVRKHFERNRKDKVVKFPLILIES*IH*LARYYKTKRVLP> |
Parental | PNWKYESSTASA |
PNWKYES.TASA | |
Retrocopy | PNWKYESLTASA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |