RetrogeneDB ID: | retro_mmus_2459 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 4:52077261..52077462(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000082963 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl22 | ||
Ensembl ID: | ENSMUSG00000028936 | ||
Aliases: | Rpl22, 2700038K18Rik | ||
Description: | ribosomal protein L22 [Source:MGI Symbol;Acc:MGI:99262] |
Percent Identity: | 68.66 % |
Parental protein coverage: | 52.34 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | PVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKN |
PVE.GI.D.A...Q..Q.RIK....AGN.GGGVVTI....SKITVTS.VPFSKRYLKYLTKKYL..N | |
Retrocopy | PVEGGIRDTASLKQLPQKRIKGK*RAGNPGGGVVTIKQNMSKITVTS*VPFSKRYLKYLTKKYLMNN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 61 .84 RPM |
SRP007412_cerebellum | 0 .00 RPM | 58 .79 RPM |
SRP007412_heart | 0 .00 RPM | 91 .62 RPM |
SRP007412_kidney | 0 .00 RPM | 115 .17 RPM |
SRP007412_liver | 0 .00 RPM | 87 .71 RPM |
SRP007412_testis | 0 .00 RPM | 47 .84 RPM |
Species | RetrogeneDB ID |
---|---|
Rattus norvegicus | retro_rnor_2149 |