RetrogeneDB ID: | retro_vpac_330 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_914:93128..93499(+) | ||
Located in intron of: | ENSVPAG00000012032 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL22 | ||
Ensembl ID: | ENSVPAG00000009466 | ||
Aliases: | None | ||
Description: | ribosomal protein L22 [Source:HGNC Symbol;Acc:10315] |
Percent Identity: | 80.16 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | KKLVAK-GGKKKKQ-VLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITV |
KKLVA..GG.........FTLDCTHPVE..IMDAANFEQFL.ERIKVNGK.GNL.G.VVTIERSKSKITV | |
Retrocopy | KKLVAE<GGXXXESGSVAFTLDCTHPVEERIMDAANFEQFL*ERIKVNGKPGNLSGIVVTIERSKSKITV |
Parental | TSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDEEEEEDED |
TSEVPFSK.YLKYLTKKYL.KNNL.DWL.VVANS.ES..LRYFQINQDE.EEEDED | |
Retrocopy | TSEVPFSKSYLKYLTKKYL-KNNLCDWLHVVANSRES*KLRYFQINQDE*EEEDED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |