RetrogeneDB - Parental gene ENSPTRG00000000076 details

							
>ENSPTRG00000000076
ATGGCTCCTGTGAAAAAGCTTGTGGTGAAGGGGGGCAAAAAAAAGAAGCAAGTTCTGAAGTTCACTCTTGATTGCACCCA

CCCTGTAGAAGATGGAATCATGGATGCTGCCAATTTTGAGCAGTTTTTGCAAGAAAGGATCAAAGTGAACGGAAAAGCTG

GGAACCTTGGTGGAGGGGTGGTGACCATCGAAAGGAGCAAGAGCAAGATCACCGTGACATCCGAGGTGCCTTTCTCCAAA

AGGTATTTGAAATATCTCACCAAAAAATATTTGAAGAAGAATAATCTACGTGACTGGTTGCGCGTAGTTGCTAACAGCAA

AGAGAGTTACGAATTACGTTACTTCCAGATTAACCAGGACGAAGAAGAGGAGGAAGACGAGGATTAA

Library	Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex	120 .78 RPM
SRP007412_cerebellum	300 .48 RPM
SRP007412_heart	196 .18 RPM
SRP007412_kidney	266 .30 RPM
SRP007412_liver	228 .58 RPM
SRP007412_testis	173 .25 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000009864	ortholog_one2one	7 retrogenes	retro_amel_1219, retro_amel_1247, retro_amel_1775, retro_amel_1793, retro_amel_369, retro_amel_830, retro_amel_870,
Bos taurus	ENSBTAG00000014423	ortholog_one2one	4 retrogenes	retro_btau_1491, retro_btau_566, retro_btau_694, retro_btau_892,
Choloepus hoffmanni	ENSCHOG00000007477	ortholog_one2one	2 retrogenes	retro_chof_1785, retro_chof_2537,
Callithrix jacchus	ENSCJAG00000000132	ortholog_one2one	12 retrogenes	retro_cjac_1032, retro_cjac_1055, retro_cjac_1257, retro_cjac_1301, retro_cjac_2352, retro_cjac_2436, retro_cjac_2874, retro_cjac_2954, retro_cjac_3925, retro_cjac_472, retro_cjac_611, retro_cjac_867,
Dasypus novemcinctus	ENSDNOG00000013166	ortholog_one2one	8 retrogenes	retro_dnov_1282, retro_dnov_1523, retro_dnov_2043, retro_dnov_2126, retro_dnov_38, retro_dnov_382, retro_dnov_425, retro_dnov_567,
Felis catus	ENSFCAG00000006320	ortholog_one2one	3 retrogenes	retro_fcat_1591, retro_fcat_1656, retro_fcat_1715,
Homo sapiens	ENSG00000116251	ortholog_one2one	16 retrogenes	retro_hsap_1162, retro_hsap_1299, retro_hsap_1445, retro_hsap_1720, retro_hsap_2136, retro_hsap_2138, retro_hsap_2142, retro_hsap_2306, retro_hsap_2315, retro_hsap_349, retro_hsap_3814, retro_hsap_485, retro_hsap_4865, retro_hsap_4909, retro_hsap_600, retro_hsap_726,
Gorilla gorilla	ENSGGOG00000027739	possible_ortholog	10 retrogenes	retro_ggor_1111, retro_ggor_1652, retro_ggor_1655, retro_ggor_1708, retro_ggor_1757, retro_ggor_2268, retro_ggor_2567, retro_ggor_37, retro_ggor_531, retro_ggor_613,
Loxodonta africana	ENSLAFG00000006352	ortholog_one2one	5 retrogenes	retro_lafr_1100, retro_lafr_380, retro_lafr_649, retro_lafr_981, retro_lafr_993,
Macaca mulatta	ENSMMUG00000018347	possible_ortholog	12 retrogenes	retro_mmul_1004, retro_mmul_1044, retro_mmul_1047, retro_mmul_1512, retro_mmul_2209, retro_mmul_2264, retro_mmul_2467, retro_mmul_2601, retro_mmul_271, retro_mmul_445, retro_mmul_469, retro_mmul_80,
Mustela putorius furo	ENSMPUG00000007087	ortholog_one2many	6 retrogenes	retro_mputfur_1074, retro_mputfur_1277, retro_mputfur_134, retro_mputfur_1433, retro_mputfur_578, retro_mputfur_873,
Mus musculus	ENSMUSG00000028936	ortholog_one2one	5 retrogenes	retro_mmus_1883, retro_mmus_1906, retro_mmus_2123, retro_mmus_2459, retro_mmus_3171,
Nomascus leucogenys	ENSNLEG00000010337	ortholog_one2one	10 retrogenes	retro_nleu_1309, retro_nleu_2354, retro_nleu_2367, retro_nleu_2509, retro_nleu_2747, retro_nleu_2772, retro_nleu_2783, retro_nleu_2881, retro_nleu_2946, retro_nleu_3003,
Otolemur garnettii	ENSOGAG00000014776	ortholog_one2one	7 retrogenes	retro_ogar_1116, retro_ogar_1415, retro_ogar_1418, retro_ogar_2188, retro_ogar_2979, retro_ogar_399, retro_ogar_917,
Pongo abelii	ENSPPYG00000001951	ortholog_one2one	11 retrogenes	retro_pabe_1196, retro_pabe_1213, retro_pabe_1435, retro_pabe_166, retro_pabe_248, retro_pabe_3114, retro_pabe_349, retro_pabe_3782, retro_pabe_3817, retro_pabe_590, retro_pabe_966,
Rattus norvegicus	ENSRNOG00000011104	ortholog_one2one	5 retrogenes	retro_rnor_1315, retro_rnor_1687, retro_rnor_2089, retro_rnor_2149, retro_rnor_439,
Sus scrofa	ENSSSCG00000003367	ortholog_one2one	4 retrogenes	retro_sscr_257, retro_sscr_276, retro_sscr_497, retro_sscr_509,
Tupaia belangeri	ENSTBEG00000009172	ortholog_one2one	33 retrogenes	retro_tbel_1047, retro_tbel_1181, retro_tbel_1263, retro_tbel_1422, retro_tbel_1773, retro_tbel_1951, retro_tbel_2121, retro_tbel_2182, retro_tbel_2231, retro_tbel_2429, retro_tbel_2452, retro_tbel_2801, retro_tbel_2923, retro_tbel_3090, retro_tbel_3160, retro_tbel_3265, retro_tbel_3362, retro_tbel_3482, retro_tbel_3719, retro_tbel_3885, retro_tbel_3960, retro_tbel_397, retro_tbel_4199, retro_tbel_4225, retro_tbel_4386, retro_tbel_4437, retro_tbel_4607, retro_tbel_504, retro_tbel_582, retro_tbel_659, retro_tbel_680, retro_tbel_755, retro_tbel_920,
Tursiops truncatus	ENSTTRG00000010488	ortholog_one2one	8 retrogenes	retro_ttru_1268, retro_ttru_147, retro_ttru_1519, retro_ttru_1564, retro_ttru_1739, retro_ttru_413, retro_ttru_714, retro_ttru_871,
Vicugna pacos	ENSVPAG00000009466	ortholog_one2one	1 retrogene	retro_vpac_330,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_ptro_275	81.25	99.22	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_ptro_365	65.79	88.28	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_ptro_502	78.57	97.66	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_ptro_517	78.40	95.31	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_ptro_795	84.50	99.22	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_ptro_950	81.68	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_ptro_984	86.29	96.88	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_ptro_1562	87.60	100.00	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_ptro_1563	88.37	100.00	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_ptro_1630	91.07	87.50	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_ptro_1690	75.00	85.94	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_ptro_2596	90.32	71.88	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_ptro_3056	70.27	86.72	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_ptro_3240	64.76	81.25	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSPTRG00000000076 retrocopies

Parental gene:	RPL22, ENSPTRG00000000076
Aliases:	None
Description:	ribosomal protein L22 [Source:HGNC Symbol;Acc:10315]
Organism:	*Chimpanzee (Pan troglodytes)*
Coordinates:	1:6172641..6188002(-)

Parental gene:

RPL22, ENSPTRG00000000076