RetrogeneDB ID: | retro_cjac_867 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 11:86608993..86609364(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL22 | ||
Ensembl ID: | ENSCJAG00000000132 | ||
Aliases: | None | ||
Description: | ribosomal protein L22 [Source:HGNC Symbol;Acc:10315] |
Percent Identity: | 73.02 % |
Parental protein coverage: | 97.66 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | VKKLVAKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVT |
VK.L...G.KKK.Q.LK.TL.C.HP.EDGIM.AANFEQFLQE.IKVNGK.GNLG.G.VTI.R..SKITVT | |
Retrocopy | VKNLW*RGAKKKRQILKLTLECAHPIEDGIMNAANFEQFLQEKIKVNGKTGNLGRGMVTI*RRTSKITVT |
Parental | SEVPFSKRYLKYLTKKY-LKKNNLRDWLRVVANSKESYELRYFQINQDEEEEEDED |
SEV.FSKRYLKYL.KK..LKKNNL.DWL..VANSKE....RY.Q.NQDEEE.ED.D | |
Retrocopy | SEVAFSKRYLKYLSKKI<LKKNNLCDWLCIVANSKE-L*IRYCQVNQDEEEVEDKD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 75 .77 RPM |
SRP051959_heart | 0 .00 RPM | 79 .35 RPM |
SRP051959_kidney | 0 .02 RPM | 85 .93 RPM |
SRP051959_liver | 0 .00 RPM | 99 .12 RPM |
SRP051959_lung | 0 .00 RPM | 102 .40 RPM |
SRP051959_lymph_node | 0 .00 RPM | 147 .76 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 76 .52 RPM |
SRP051959_spleen | 0 .00 RPM | 129 .01 RPM |