Parental gene:

Rpl22, ENSRNOG00000011104

Aliases:None
Description:60S ribosomal protein L22 [Source:RefSeq peptide;Acc:NP_112366]
Organism:Rat (Rattus norvegicus)
Coordinates:5:173055214..173066404(+)


>ENSRNOG00000011104
ACACCAGTTAAAAAGCTTGTGGCGAAGGGGGGCAAAAAAAAGAAGCAGGTTTTGAAGTTCACCCTTGACTGCACTCACCC
TGTAGAAGATGGAATCATGGATGCTGCCAATTTTGAGCAGTTCCTCCAGGAGAGGATCAAGGTGAACGGGAAAGCTGGTA
ACCTTGGCGGAGGGGTTGTGACCATCGAGCGGAGCAAGAGCAAGATCACTGTCACTTCCGAGGTGCCTTTCTCCAAAAGG
TATTTGAAATATCTCACCAAAAAATATTTGAAGAAGAACAACCTCCGAGACTGGCTGCGCGTCGTTGCCAACAGCAAGGA
GAGCTACGAGCTGCGCTACTTCCAGATCAACCAGGACGAGGAGGAGGAGGAGGACGAGGATTAA

Library Parental gene expression (RPM)
SRP017611_liver 12 .30 RPM
SRP017611_kidney 13 .68 RPM
SRP017611_brain 12 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009864 ortholog_one2one 7 retrogenes
retro_amel_1219, retro_amel_1247, retro_amel_1775, retro_amel_1793, retro_amel_369, retro_amel_830, retro_amel_870,
Bos taurus ENSBTAG00000014423 ortholog_one2one 4 retrogenes
retro_btau_1491, retro_btau_566, retro_btau_694, retro_btau_892,
Choloepus hoffmanni ENSCHOG00000007477 ortholog_one2one 2 retrogenes
retro_chof_1785, retro_chof_2537,
Callithrix jacchus ENSCJAG00000000132 ortholog_one2one 12 retrogenes
retro_cjac_1032, retro_cjac_1055, retro_cjac_1257, retro_cjac_1301, retro_cjac_2352, retro_cjac_2436, retro_cjac_2874, retro_cjac_2954, retro_cjac_3925, retro_cjac_472, retro_cjac_611, retro_cjac_867,
Dasypus novemcinctus ENSDNOG00000013166 ortholog_one2one 8 retrogenes
retro_dnov_1282, retro_dnov_1523, retro_dnov_2043, retro_dnov_2126, retro_dnov_38, retro_dnov_382, retro_dnov_425, retro_dnov_567,
Felis catus ENSFCAG00000006320 ortholog_one2one 3 retrogenes
retro_fcat_1591, retro_fcat_1656, retro_fcat_1715,
Homo sapiens ENSG00000116251 ortholog_one2one 16 retrogenes
retro_hsap_1162, retro_hsap_1299, retro_hsap_1445, retro_hsap_1720, retro_hsap_2136, retro_hsap_2138, retro_hsap_2142, retro_hsap_2306, retro_hsap_2315, retro_hsap_349, retro_hsap_3814, retro_hsap_485, retro_hsap_4865, retro_hsap_4909, retro_hsap_600, retro_hsap_726,
Gorilla gorilla ENSGGOG00000027739 possible_ortholog 10 retrogenes
retro_ggor_1111, retro_ggor_1652, retro_ggor_1655, retro_ggor_1708, retro_ggor_1757, retro_ggor_2268, retro_ggor_2567, retro_ggor_37, retro_ggor_531, retro_ggor_613,
Loxodonta africana ENSLAFG00000006352 ortholog_one2one 5 retrogenes
retro_lafr_1100, retro_lafr_380, retro_lafr_649, retro_lafr_981, retro_lafr_993,
Macaca mulatta ENSMMUG00000018347 possible_ortholog 12 retrogenes
retro_mmul_1004, retro_mmul_1044, retro_mmul_1047, retro_mmul_1512, retro_mmul_2209, retro_mmul_2264, retro_mmul_2467, retro_mmul_2601, retro_mmul_271, retro_mmul_445, retro_mmul_469, retro_mmul_80,
Mustela putorius furo ENSMPUG00000007087 ortholog_one2many 6 retrogenes
retro_mputfur_1074, retro_mputfur_1277, retro_mputfur_134, retro_mputfur_1433, retro_mputfur_578, retro_mputfur_873,
Mus musculus ENSMUSG00000028936 ortholog_one2one 5 retrogenes
retro_mmus_1883, retro_mmus_1906, retro_mmus_2123, retro_mmus_2459, retro_mmus_3171,
Nomascus leucogenys ENSNLEG00000010337 ortholog_one2one 10 retrogenes
retro_nleu_1309, retro_nleu_2354, retro_nleu_2367, retro_nleu_2509, retro_nleu_2747, retro_nleu_2772, retro_nleu_2783, retro_nleu_2881, retro_nleu_2946, retro_nleu_3003,
Otolemur garnettii ENSOGAG00000014776 ortholog_one2one 7 retrogenes
retro_ogar_1116, retro_ogar_1415, retro_ogar_1418, retro_ogar_2188, retro_ogar_2979, retro_ogar_399, retro_ogar_917,
Pongo abelii ENSPPYG00000001951 ortholog_one2one 11 retrogenes
retro_pabe_1196, retro_pabe_1213, retro_pabe_1435, retro_pabe_166, retro_pabe_248, retro_pabe_3114, retro_pabe_349, retro_pabe_3782, retro_pabe_3817, retro_pabe_590, retro_pabe_966,
Pan troglodytes ENSPTRG00000000076 ortholog_one2one 14 retrogenes
retro_ptro_1562, retro_ptro_1563, retro_ptro_1630, retro_ptro_1690, retro_ptro_2596, retro_ptro_275, retro_ptro_3056, retro_ptro_3240, retro_ptro_365, retro_ptro_502, retro_ptro_517, retro_ptro_795, retro_ptro_950, retro_ptro_984,
Rattus norvegicus ENSRNOG00000011817 within_species_paralog 2 retrogenes
retro_rnor_111, retro_rnor_2152,
Sus scrofa ENSSSCG00000003367 ortholog_one2one 4 retrogenes
retro_sscr_257, retro_sscr_276, retro_sscr_497, retro_sscr_509,
Tupaia belangeri ENSTBEG00000009172 ortholog_one2one 33 retrogenes
retro_tbel_1047, retro_tbel_1181, retro_tbel_1263, retro_tbel_1422, retro_tbel_1773, retro_tbel_1951, retro_tbel_2121, retro_tbel_2182, retro_tbel_2231, retro_tbel_2429, retro_tbel_2452, retro_tbel_2801, retro_tbel_2923, retro_tbel_3090, retro_tbel_3160, retro_tbel_3265, retro_tbel_3362, retro_tbel_3482, retro_tbel_3719, retro_tbel_3885, retro_tbel_3960, retro_tbel_397, retro_tbel_4199, retro_tbel_4225, retro_tbel_4386, retro_tbel_4437, retro_tbel_4607, retro_tbel_504, retro_tbel_582, retro_tbel_659, retro_tbel_680, retro_tbel_755, retro_tbel_920,
Tursiops truncatus ENSTTRG00000010488 ortholog_one2one 8 retrogenes
retro_ttru_1268, retro_ttru_147, retro_ttru_1519, retro_ttru_1564, retro_ttru_1739, retro_ttru_413, retro_ttru_714, retro_ttru_871,
Vicugna pacos ENSVPAG00000009466 ortholog_one2one 1 retrogene
retro_vpac_330,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_439 87.72 86.61
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2. retro_rnor_1315 76.36 85.04
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3. retro_rnor_1687 88.50 88.98
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4. retro_rnor_2089 94.87 91.34
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5. retro_rnor_2149 51.49 78.74
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Download FASTA sequences of all ENSRNOG00000011104 retrocopies