RetrogeneDB ID: | retro_tbel_3885 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_27667:301..675(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL22 | ||
Ensembl ID: | ENSTBEG00000009172 | ||
Aliases: | None | ||
Description: | ribosomal protein L22 [Source:HGNC Symbol;Acc:10315] |
Percent Identity: | 62.12 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MAPVKKLVAKGG-KKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAG-NLGGG-VVTIERSK |
MAPV.KLV.KG..K.KK..LK....CT.PV.DG.M.AA.FEQFLQER.KV.GK.G..LGGG.VVT..RSK | |
Retrocopy | MAPVGKLVVKGA<KQKKHILKIPPGCTLPVGDGVMEAAKFEQFLQERTKVRGKTG<DLGGG<VVTTGRSK |
Parental | SKITVTSEVPFSKRYLKYLTKKY-LKKNNLRDWLRVVANSKESYELRYFQINQDEEEEEDED |
SK.TVTS.VPF.KRYL.....KY.L.KN.LR.WL...A.S..S....YFQ.NQD.EEE..ED | |
Retrocopy | SKVTVTSSVPFPKRYLN-SDQKY<LTKNKLRGWL-CSADSNGS*K*PYFQRNQDGEEEDEED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |