RetrogeneDB ID: | retro_rnor_2149 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 5:69915540..69915839(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl22 | ||
Ensembl ID: | ENSRNOG00000011104 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L22 [Source:RefSeq peptide;Acc:NP_112366] |
Percent Identity: | 51.49 % |
Parental protein coverage: | 78.74 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | KKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNG-KAGNLGGGVVTIERSKSKITVTSEVPFSKR |
.KKK.VLK.TLDCTH..E..I.D.AN.E.FL.ERIK.N...AG.L.GG.VTI...KSKI.V...V..... | |
Retrocopy | QKKK*VLKLTLDCTHSLEGRIRDTANLEEFL*ERIKGNE<NAGYLDGGTVTIKQNKSKIAVIL*VGAFLQ |
Parental | YLKYLTKKYLKKNNLRDWLRVVANSKESYEL |
...........KN.L.DW..VV.NS..SYEL | |
Retrocopy | *VFEMLRQKCLKNSL*DWFCVVMNSTKSYEL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 12 .44 RPM |
SRP017611_kidney | 0 .00 RPM | 13 .68 RPM |
SRP017611_liver | 0 .00 RPM | 12 .30 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_2459 |