RetrogeneDB ID: | retro_mmus_1906 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 2:38939614..38939932(+) | ||
Located in intron of: | ENSMUSG00000046618 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000083776 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl22 | ||
Ensembl ID: | ENSMUSG00000028936 | ||
Aliases: | Rpl22, 2700038K18Rik | ||
Description: | ribosomal protein L22 [Source:MGI Symbol;Acc:MGI:99262] |
Percent Identity: | 65.14 % |
Parental protein coverage: | 83.59 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | KFTLDCTHPVEDGI-MDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSE-VPFSKRYLKYLT |
KFT.D..H..ED.....A...EQFL.ER.KV..KA.NLGGGVVTIE.SK.K..VTSE...FSKR.LK.LT | |
Retrocopy | KFTPDWSHHIEDSV<VNATRLEQFL*ERLKVSRKAWNLGGGVVTIEVSKNKTSVTSE>MSFSKRHLKCLT |
Parental | KKYLKKNNLRDWLRVVANSKESYELRYFQINQDEEEEED |
KKY..KN.L.DWL..VANSKESYEL.YFQINQDE....D | |
Retrocopy | KKYM-KN*LQDWLCFVANSKESYELCYFQINQDEDD*DD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 61 .84 RPM |
SRP007412_cerebellum | 0 .00 RPM | 58 .79 RPM |
SRP007412_heart | 0 .00 RPM | 91 .62 RPM |
SRP007412_kidney | 0 .00 RPM | 115 .17 RPM |
SRP007412_liver | 0 .00 RPM | 87 .71 RPM |
SRP007412_testis | 0 .00 RPM | 47 .84 RPM |