RetrogeneDB ID: | retro_dnov_2043 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_44286:11664..12038(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL22 | ||
Ensembl ID: | ENSDNOG00000013166 | ||
Aliases: | None | ||
Description: | ribosomal protein L22 [Source:HGNC Symbol;Acc:10315] |
Percent Identity: | 74.81 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAPVKKLVV-KGGKKK--KQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSK |
..P.KKLVV..GG......QVL..TLDCTH....GIM.AANF.QFLQERIKVNGK.G.L.GG.VTIERSK | |
Retrocopy | LVPMKKLVV<EGGXXXXXQQVLRLTLDCTH----GIMHAANFKQFLQERIKVNGKVGILSGGIVTIERSK |
Parental | SKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDEEEEEDED |
SKITVTSEVPF.KR.LKYLTKKYLKKNNL.DWL..V.NSKESYEL.YFQI.QDEE.E.DED | |
Retrocopy | SKITVTSEVPFPKR*LKYLTKKYLKKNNLPDWLHIVGNSKESYELLYFQI-QDEEGEVDED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 311 .54 RPM |
SRP012922_cerebellum | 0 .00 RPM | 151 .90 RPM |
SRP012922_heart | 0 .00 RPM | 226 .69 RPM |
SRP012922_kidney | 0 .00 RPM | 400 .29 RPM |
SRP012922_liver | 0 .00 RPM | 174 .31 RPM |
SRP012922_lung | 0 .15 RPM | 514 .83 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 384 .25 RPM |
SRP012922_spleen | 0 .00 RPM | 648 .65 RPM |