RetrogeneDB ID:

retro_tbel_1951

Retrocopy
location
Organism:Treeshrew (Tupaia belangeri)
Coordinates:GeneScaffold_6059:160046..160425(+)
Located in intron of:ENSTBEG00000012474
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL22
Ensembl ID:ENSTBEG00000009172
Aliases:None
Description:ribosomal protein L22 [Source:HGNC Symbol;Acc:10315]


Retrocopy-Parental alignment summary:






>retro_tbel_1951
GCGCCCATGAAAAAGCTTGTGGCAAAGGGGTGCAAAAAAAGAAGCAGGTTTTGAAGTTTACCCTTGACTGCACCTACCTT
GTAGAAGATGGAATCATGGATGCTGCCAATTTTGTGCAGTTTTTCTCCAAAAGAATCAAAGTGAATGGAAAAGTTGGAAT
CTCAGTGGAGAGGTTTTAACCATTGAAACGAGCAAGAGCAAGATCACCGTAACTTCTGAGGCAGCTTTTTCCAAAGAGAT
TTAAAAATATCTCACCAAAAAATATTTGAAGAATAATAATCTACGTGATTGGTCGCACGCAGGTGCTAACAGCAAAGAGA
GCTATGAATTACGTTACTTCCAGATTAACCAGGATGAAGAGGAGGAGGAAGATGAGGAT

ORF - retro_tbel_1951 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 80.62 %
Parental protein coverage: 99.22 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalAPVKKLVAKGGKK-KKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAG-NLGGGVVTIERSKSK
AP.KKLVAKG.KK.KKQVLKFTLDCT..VEDGIMDAANF.QF...RIKVNGK.G.NL.G.V.TIE.SKSK
RetrocopyAPMKKLVAKGCKK<KKQVLKFTLDCTYLVEDGIMDAANFVQFFSKRIKVNGKVG<NLSGEVLTIETSKSK
ParentalITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDEEEEEDED
ITVTSE..FSK...KYLTKKYLK.NNLRDW....ANSKESYELRYFQINQDEEEEEDED
RetrocopyITVTSEAAFSKEI*KYLTKKYLKNNNLRDWSHAGANSKESYELRYFQINQDEEEEEDED

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tupaia belangeri was not studied using RNA-Seq expression data.
Tupaia belangeri was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_tbel_1951 retrocopy.
Tupaia belangeri was not studied using FANTOM5 data.
retro_tbel_1951 was not experimentally validated.

Retrocopy orthology:
Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 22 parental genes, and 200 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000098647 retrocopies
Bos taurus ENSBTAG000000144234 retrocopies
Choloepus hoffmanni ENSCHOG000000074772 retrocopies
Callithrix jacchus ENSCJAG0000000013212 retrocopies
Dasypus novemcinctus ENSDNOG000000131668 retrocopies
Felis catus ENSFCAG000000063203 retrocopies
Homo sapiens ENSG0000011625116 retrocopies
Gorilla gorilla ENSGGOG0000002773910 retrocopies
Loxodonta africana ENSLAFG000000063525 retrocopies
Macaca mulatta ENSMMUG0000001834712 retrocopies
Mustela putorius furoENSMPUG000000070876 retrocopies
Mus musculus ENSMUSG000000289365 retrocopies
Nomascus leucogenys ENSNLEG0000001033710 retrocopies
Otolemur garnettii ENSOGAG000000147767 retrocopies
Pongo abelii ENSPPYG0000000195111 retrocopies
Pan troglodytes ENSPTRG0000000007614 retrocopies
Rattus norvegicus ENSRNOG000000111045 retrocopies
Sus scrofa ENSSSCG000000033674 retrocopies
Tupaia belangeri ENSTBEG0000000035717 retrocopies
Tupaia belangeri ENSTBEG00000009172 33 retrocopies
Tursiops truncatus ENSTTRG000000104888 retrocopies
Vicugna pacos ENSVPAG000000094661 retrocopy



Copyright © RetrogeneDB 2014-2017