RetrogeneDB ID: | retro_rnor_1687 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:221602585..221602924(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl22 | ||
Ensembl ID: | ENSRNOG00000011104 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L22 [Source:RefSeq peptide;Acc:NP_112366] |
Percent Identity: | 88.5 % |
Parental protein coverage: | 88.98 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKY |
KQVLKFT.DCTHPVEDGIMDAANFEQFL.ERIKVN.KAGNLGGGVVTIE.SK.KI.VTSEVPFSKRYLKY | |
Retrocopy | KQVLKFTPDCTHPVEDGIMDAANFEQFLPERIKVNRKAGNLGGGVVTIEQSKNKIAVTSEVPFSKRYLKY |
Parental | LTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDEEEEEDED |
LTKK.LK.NNL.DWLRV.ANSKESYELR.FQINQD.EEE.DED | |
Retrocopy | LTKKCLKNNNL*DWLRVLANSKESYELRCFQINQDDEEEGDED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 12 .44 RPM |
SRP017611_kidney | 0 .07 RPM | 13 .68 RPM |
SRP017611_liver | 0 .00 RPM | 12 .30 RPM |