RetrogeneDB ID: | retro_dnov_567 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_6252:46232..46600(-) | ||
Located in intron of: | ENSDNOG00000001498 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL22 | ||
Ensembl ID: | ENSDNOG00000013166 | ||
Aliases: | None | ||
Description: | ribosomal protein L22 [Source:HGNC Symbol;Acc:10315] |
Percent Identity: | 63.36 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAPVKKLVVK-GGK-KKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKS |
MA..KKLV.K.G.K.KKKQ..KF.LD...P.E....DAANF.QFLQ.RIK.NGKAG..G..VVT.ER..S | |
Retrocopy | MATMKKLVGK>GSKTKKKQIPKFHLDYVRPIEEESVDAANFKQFLQGRIKANGKAGHRGERVVTSERNRS |
Parental | KITVTSEVPFSKRYLKYLTKKYLKKNNLRDW-LRVVANSKESYELRYFQINQDEEEEEDED |
KI..TSEV.FSK.YLKYLTK.YLKK.NL..W.L...ANSKESY....FQ.NQDE..E..ED | |
Retrocopy | KI--TSEV*FSKTYLKYLTKQYLKK-NLCNW>LCNTANSKESY----FQVNQDEQHEGNED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 311 .54 RPM |
SRP012922_cerebellum | 0 .00 RPM | 151 .90 RPM |
SRP012922_heart | 0 .00 RPM | 226 .69 RPM |
SRP012922_kidney | 0 .00 RPM | 400 .29 RPM |
SRP012922_liver | 0 .00 RPM | 174 .31 RPM |
SRP012922_lung | 0 .00 RPM | 514 .83 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 384 .25 RPM |
SRP012922_spleen | 0 .00 RPM | 648 .65 RPM |