RetrogeneDB ID: | retro_rnor_2089 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 4:183274724..183275071(-) | ||
Located in intron of: | ENSRNOG00000018317 | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000028747 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl22 | ||
Ensembl ID: | ENSRNOG00000011104 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L22 [Source:RefSeq peptide;Acc:NP_112366] |
Percent Identity: | 94.87 % |
Parental protein coverage: | 91.34 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | PVKKLVAKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITV |
PVKKLVAKGG...KQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITV | |
Retrocopy | PVKKLVAKGGXXXKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITV |
Parental | TSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYEL-RYFQIN |
TSEVPFSKRYLKYLTKKYLKKN.LRDWLRVVANSKESYEL..YFQIN | |
Retrocopy | TSEVPFSKRYLKYLTKKYLKKNTLRDWLRVVANSKESYEL<AYFQIN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .01 RPM | 12 .44 RPM |
SRP017611_kidney | 3 .49 RPM | 13 .68 RPM |
SRP017611_liver | 3 .50 RPM | 12 .30 RPM |