RetrogeneDB ID: | retro_dnov_38 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_147058:3948..4305(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSDNOG00000013231 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL22 | ||
Ensembl ID: | ENSDNOG00000013166 | ||
Aliases: | None | ||
Description: | ribosomal protein L22 [Source:HGNC Symbol;Acc:10315] |
Percent Identity: | 68.91 % |
Parental protein coverage: | 92.97 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFS |
K..K.KK...KF.LD.THPVED.I.D..NFEQFL.E..KVN.K.GNLG..VV.IER.K.KITV.SE..FS | |
Retrocopy | KDKKPKKSTWKFNLDLTHPVEDRIFDSGNFEQFLREKVKVNVKTGNLGN-VVHIERFKNKITVVSEKQFS |
Parental | KRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDEEEEEDED |
KRYLKYLTKKYLKKNNLRDWL.VVA..KE..EL.YFQI.Q.E...E.ED | |
Retrocopy | KRYLKYLTKKYLKKNNLRDWLHVVASDKETFELCYFQISQHEDGSESED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 11 .28 RPM | 311 .54 RPM |
SRP012922_cerebellum | 7 .15 RPM | 151 .90 RPM |
SRP012922_heart | 10 .67 RPM | 226 .69 RPM |
SRP012922_kidney | 13 .69 RPM | 400 .29 RPM |
SRP012922_liver | 6 .19 RPM | 174 .31 RPM |
SRP012922_lung | 11 .15 RPM | 514 .83 RPM |
SRP012922_quadricep_muscle | 7 .10 RPM | 384 .25 RPM |
SRP012922_spleen | 17 .51 RPM | 648 .65 RPM |