RetrogeneDB ID: | retro_vpac_528 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_3275:203632..204404(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSVPAG00000007368 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 84.94 % |
Parental protein coverage: | 99.61 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | QNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRN |
..EYIELH.KRYGY.LDY..KKRKKEGRE.HERSKKAKKMIGLKAKLYHK..HAEKIQMKKTIKMHEKRN | |
Retrocopy | KKEYIELHCKRYGYNLDYYKKKRKKEGRESHERSKKAKKMIGLKAKLYHKKHHAEKIQMKKTIKMHEKRN |
Parental | TKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRK |
TK.KNDEKTPQGAVPAYLLDREGQSRAKVLS.MIKQK.KEKAGKWEVPLPKVRAQGETEVLKVI.TGK.. | |
Retrocopy | TKKKNDEKTPQGAVPAYLLDREGQSRAKVLSSMIKQK*KEKAGKWEVPLPKVRAQGETEVLKVI*TGK-R |
Parental | KK-AWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTSL |
KK..WKRMVTKVCFVGDGFT.K.PKYERFIRPMGL.FKKAHVT.PELKATFCLP.LGVKKNPSSPLYT.L | |
Retrocopy | KK>TWKRMVTKVCFVGDGFT*KAPKYERFIRPMGLHFKKAHVTRPELKATFCLPVLGVKKNPSSPLYTNL |
Parental | GVITKGTVIEVNVSELGLVTQGGKVIWXXXXXXXXXXXXDGCINAVLLV |
G.ITKG.V.EVNVS.LGLVTQGGKVIW............DGCINAVLLV | |
Retrocopy | GAITKGAVTEVNVSKLGLVTQGGKVIWGKYAQVTNSPENDGCINAVLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |