RetrogeneDB ID: | retro_btau_949 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 21:27737163..27737943(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSBTAG00000003066 | ||
Aliases: | NSA2, TINP1 | ||
Description: | Ribosome biogenesis protein NSA2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q3SX11] |
Percent Identity: | 96.15 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEK |
MPQN.Y.ELHRKRYGYRLDYHEKKRKKEG.EAHERSKKAKKM.GLKAKLYHKQRHAEKIQMKKTIK.HEK | |
Retrocopy | MPQNGYVELHRKRYGYRLDYHEKKRKKEG*EAHERSKKAKKMTGLKAKLYHKQRHAEKIQMKKTIKIHEK |
Parental | RNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGK |
RNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLS.MIKQKRKEKAGKWEVPLPKVRAQGETEVLKVI.TGK | |
Retrocopy | RNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSSMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVI*TGK |
Parental | RKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTT |
RKKKAWKRMVTKVCFVGDGFTRKPPKYERF.RPMGLRFKKAHVTHPELKA.FCLPILGVKKNPSSPLYTT | |
Retrocopy | RKKKAWKRMVTKVCFVGDGFTRKPPKYERFVRPMGLRFKKAHVTHPELKAAFCLPILGVKKNPSSPLYTT |
Parental | LGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV |
LGVITKGTVIEVNVS.LGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV | |
Retrocopy | LGVITKGTVIEVNVSKLGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 6 .49 RPM |
ERP005899_muscle | 0 .11 RPM | 30 .67 RPM |
SRP017611_brain | 0 .05 RPM | 2 .56 RPM |
SRP017611_kidney | 0 .00 RPM | 6 .52 RPM |
SRP017611_liver | 0 .00 RPM | 1 .59 RPM |
SRP030211_testis | 0 .05 RPM | 21 .11 RPM |