RetrogeneDB ID: | retro_mmus_1329 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 15:13452455..13453109(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Nsa2 | ||
Ensembl ID: | ENSMUSG00000060739 | ||
Aliases: | Nsa2, 5730427N09Rik, LNR42, Nsa2p, Tinp1, Yr29 | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1913883] |
Percent Identity: | 93.58 % |
Parental protein coverage: | 83.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | IGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKE |
IGLKAKLYHKQRHAEKIQMKKTIKMHEKRN.KQKD.EK.PQGAV.AYLLDREGQSRAKVL.N.IKQKRKE | |
Retrocopy | IGLKAKLYHKQRHAEKIQMKKTIKMHEKRNPKQKDEEKIPQGAVSAYLLDREGQSRAKVLPNRIKQKRKE |
Parental | KAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAH |
KA.KWEVPLPKVRAQGETEVLKVIRTGKR.KKAWKRMVT.VC.VGDGFTRKPP.YERFIRPMGLRFKKAH | |
Retrocopy | KAEKWEVPLPKVRAQGETEVLKVIRTGKREKKAWKRMVTNVCSVGDGFTRKPPNYERFIRPMGLRFKKAH |
Parental | VTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDG |
VTHPELKATFCLPIL..KKNPSSPLYTTLGVITKGTVIEVN.SELGLVTQGGKVIWGKYAQVTNNPENDG | |
Retrocopy | VTHPELKATFCLPILRLKKNPSSPLYTTLGVITKGTVIEVNMSELGLVTQGGKVIWGKYAQVTNNPENDG |
Parental | CINAVLLV |
CINAVLLV | |
Retrocopy | CINAVLLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 10 .05 RPM |
SRP007412_cerebellum | 0 .00 RPM | 9 .99 RPM |
SRP007412_heart | 0 .00 RPM | 16 .09 RPM |
SRP007412_kidney | 0 .00 RPM | 22 .87 RPM |
SRP007412_liver | 0 .00 RPM | 19 .72 RPM |
SRP007412_testis | 0 .00 RPM | 25 .52 RPM |