RetrogeneDB ID: | retro_sscr_288 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 11:75453647..75454079(-) | ||
Located in intron of: | ENSSSCG00000009516 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSSSCG00000014075 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 72.92 % |
Parental protein coverage: | 55. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSK-KAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHE |
MPQNE...LHRKR.GYRLD.HEK..KKEGRE.........KKM.GLKAKL.HKQRHAEK..M..T.KM.E | |
Retrocopy | MPQNEHLGLHRKRDGYRLDDHEKREKKEGRERFVTGQ*RQKKMTGLKAKLHHKQRHAEKREMRRTMKMLE |
Parental | KRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTG |
KRNTKQ...EKTPQG.VPA.LLDREGQS.A.VLSNM.KQ.RKEKAGKWEVP.P.V.AQGE.EV.KVIRTG | |
Retrocopy | KRNTKQQDEEKTPQGEVPACLLDREGQSQARVLSNMVKQNRKEKAGKWEVPWPNVCAQGEREVFKVIRTG |
Parental | KRKK |
.RKK | |
Retrocopy | RRKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 59 .33 RPM |
SRP014902_testis | 0 .00 RPM | 71 .71 RPM |
SRP018288_heart | 0 .00 RPM | 81 .23 RPM |
SRP018288_kidney | 0 .00 RPM | 53 .09 RPM |
SRP018288_liver | 0 .00 RPM | 44 .29 RPM |
SRP018288_lung | 0 .00 RPM | 111 .40 RPM |
SRP018856_adipose | 0 .00 RPM | 142 .15 RPM |
SRP035408_brain | 0 .00 RPM | 122 .82 RPM |
SRP035408_liver | 0 .00 RPM | 70 .95 RPM |