RetrogeneDB ID: | retro_pvam_476 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_3364:65769..66260(-) | ||
Located in intron of: | ENSPVAG00000000828 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSA2 | ||
Ensembl ID: | ENSPVAG00000005396 | ||
Aliases: | None | ||
Description: | NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30728] |
Percent Identity: | 82.04 % |
Parental protein coverage: | 63.85 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKK-AKKMIGLKAKLYHKQRHAEKIQMKKTIKMHE |
M.QN.YIELHRKRYGY.LD.HEKKRKKEGREAHERSK...K.MI.LKAKLYHKQRHAEKIQMKKT.KMHE | |
Retrocopy | MSQNRYIELHRKRYGYCLDDHEKKRKKEGREAHERSKQ<VKEMIALKAKLYHKQRHAEKIQMKKTVKMHE |
Parental | KRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTG |
KRNTKQKNDEKTPQGAVPAYLLDREGQS.AKVLSN.IKQK.KEKAGKWEVP.PKV.AQGET......... | |
Retrocopy | KRNTKQKNDEKTPQGAVPAYLLDREGQSQAKVLSNVIKQK*KEKAGKWEVPVPKVLAQGETGIKSYL--N |
Parental | KRKKKAWKRMVTKVCFVGDGFTRKPPK |
...K.AWKRM.TK.CFVGDGFTRKPPK | |
Retrocopy | REEKEAWKRMLTKFCFVGDGFTRKPPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |