RetrogeneDB ID: | retro_mmus_1230 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 14:109566617..109566947(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Acp1 | ||
Ensembl ID: | ENSMUSG00000044573 | ||
Aliases: | Acp1, 4632432E04Rik, AI427468, Acp-1, LMW-PTP | ||
Description: | acid phosphatase 1, soluble [Source:MGI Symbol;Acc:MGI:87881] |
Percent Identity: | 75.89 % |
Parental protein coverage: | 68.99 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAEVGSKSVLFVCLGNICRSPIAEAVFRKLVTDEKVSDNWAIDSSAVSDWNV-GRPPDP-RAVSCLRNHG |
M.EVGSKSVLF.CL.NIC.SPIAEAVFRKLVTD..VSDN.A.DS.A.S.W...G..P.P.RAVSC.RNHG | |
Retrocopy | MSEVGSKSVLFMCLNNICHSPIAEAVFRKLVTD*RVSDNPAMDSCADSNWKEHGLVPRP>RAVSCQRNHG |
Parental | ISTAHKARQITKEDFATFDYILCMDESNLRDLNR-KSNQVKN |
I.T.H..RQIT.EDFATF.YILCMDESNL.DLNR.KSNQVKN | |
Retrocopy | INTVHNSRQITGEDFATFNYILCMDESNLGDLNR<KSNQVKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 16 .31 RPM |
SRP007412_cerebellum | 0 .00 RPM | 4 .86 RPM |
SRP007412_heart | 0 .00 RPM | 10 .06 RPM |
SRP007412_kidney | 0 .00 RPM | 11 .45 RPM |
SRP007412_liver | 0 .00 RPM | 19 .03 RPM |
SRP007412_testis | 0 .00 RPM | 11 .53 RPM |