RetrogeneDB ID: | retro_itri_1010 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393358.1:7108733..7109161(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACP1 | ||
Ensembl ID: | ENSSTOG00000002520 | ||
Aliases: | None | ||
Description: | acid phosphatase 1, soluble [Source:HGNC Symbol;Acc:122] |
Percent Identity: | 75.51 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | GNICRSPIAEAVFRKLVTDQNDLDNWRIDSAATSTYEVGNPPDY-RGQSCMRKHGIPMNHVARQVTKEDL |
GNIC.SPIAEAVFRKL.TDQN.LDNW..DS.A......G..PD..R...C.R..GI...H.ARQ.TKEDL | |
Retrocopy | GNICWSPIAEAVFRKLITDQNNLDNWTTDSSAVRL*R-GPAPDR<RAMNCLRNRGINTAHEARQMTKEDL |
Parental | ATFDYILCMDESNLRDLNR-KSNQVKNCKAKIELL-GSYDPQKQLIIEDPYYGNDADFEVVYQQCLRCCK |
ATFDYILCMDESNLRDLNR.KSNQVKN.K..IE.L.GSYDP.KQLIIEDPY..NDADFEVVYQQCLRCCK | |
Retrocopy | ATFDYILCMDESNLRDLNR>KSNQVKNYKVRIEIL<GSYDP*KQLIIEDPYLPNDADFEVVYQQCLRCCK |
Parental | AFLEKAH |
AFLEKAH | |
Retrocopy | AFLEKAH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |