RetrogeneDB ID: | retro_rnor_1476 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:7501302..7501670(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Acp1 | ||
Ensembl ID: | ENSRNOG00000005260 | ||
Aliases: | None | ||
Description: | Low molecular weight phosphotyrosine protein phosphatase [Source:UniProtKB/Swiss-Prot;Acc:P41498] |
Percent Identity: | 60.94 % |
Parental protein coverage: | 78.88 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MAEVGSKSVLFVCLGNICRSPIAEAVFRKLVTDENVSDNWRIDSAATSTYEVGNPPDYRGQNCMKKHGIH |
MA.VGSKS..F.CL...C..PIAEAVFRKLVTDE.VSDN..I.........V...PD.R...C...H.I. | |
Retrocopy | MADVGSKSMFFMCLS--C*LPIAEAVFRKLVTDEKVSDNCSI--VTSTN*NVSQSPDTRTVSCLRNHAIS |
Parental | MQHI-ARQITREDFATFDYILCMDESNLRDLNRKSNQVKNCKAKIELLGSYDPQKQLI |
..H..A..IT.EDF.TF....CM.ESNLRDLNRK.NQVKN.KAK.ELLGSYDPQKQL. | |
Retrocopy | TAHR<AK*ITGEDFVTFNCTICMEESNLRDLNRKCNQVKN*KAKTELLGSYDPQKQLM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 10 .35 RPM |
SRP017611_kidney | 0 .00 RPM | 22 .75 RPM |
SRP017611_liver | 0 .00 RPM | 10 .56 RPM |