RetrogeneDB ID: | retro_cjac_609 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 1:123822609..123823101(-) | ||
Located in intron of: | ENSCJAG00000008021 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACP1 | ||
Ensembl ID: | ENSCJAG00000011663 | ||
Aliases: | None | ||
Description: | acid phosphatase 1, soluble [Source:HGNC Symbol;Acc:122] |
Percent Identity: | 79.04 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | GATTRGKMAEPAAKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENW-RVDSAATSGYEIGNPPDYRGQN |
GA...GKMA....KSVLFVCLGNI.RSP.AEAVFRKLVT..NISENW.R.DSAA.S.YE.GNP.DY.GQ. | |
Retrocopy | GASACGKMADQVTKSVLFVCLGNIRRSPTAEAVFRKLVTNRNISENW>RIDSAAISRYEMGNPSDYGGQR |
Parental | CMKRHGIPMSHVARQITKEDFATFD-YILCMDESNLRDLNRKSNQVKTCKAKIELLGSYDPQKQLIIEDP |
CMKR.GIPMS.VAR.IT.EDFATFD.YILCMDESNLRDLNRK.NQVKTCKAKI.LLGSYD.QKQ.II.DP | |
Retrocopy | CMKRYGIPMSLVARLIT-EDFATFD<YILCMDESNLRDLNRKRNQVKTCKAKIKLLGSYDSQKQFIIDDP |
Parental | YYGNDSDFEAVYQQCVRCCRAFLEKDH |
YYGN.SDFE.VYQQ.VRC.R.FLEK.H | |
Retrocopy | YYGNGSDFETVYQQ*VRCFRVFLEKAH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .11 RPM | 9 .94 RPM |
SRP051959_heart | 0 .07 RPM | 7 .44 RPM |
SRP051959_kidney | 0 .13 RPM | 12 .47 RPM |
SRP051959_liver | 0 .17 RPM | 11 .31 RPM |
SRP051959_lung | 0 .20 RPM | 9 .58 RPM |
SRP051959_lymph_node | 0 .16 RPM | 9 .09 RPM |
SRP051959_skeletal_muscle | 0 .04 RPM | 8 .45 RPM |
SRP051959_spleen | 0 .29 RPM | 8 .63 RPM |