RetrogeneDB ID: | retro_ocun_1328 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 7:138191303..138191650(+) | ||
Located in intron of: | ENSOCUG00000013979 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACP1 | ||
Ensembl ID: | ENSOCUG00000012876 | ||
Aliases: | None | ||
Description: | acid phosphatase 1, soluble [Source:HGNC Symbol;Acc:122] |
Percent Identity: | 70.09 % |
Parental protein coverage: | 67.88 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | ATSTYEIGNP---PDYRGQECMRRHGVPMSHVARQVTKEDFATFDYILCMDESNL-RDLNRKSNQVKNCK |
.T.TY.IGNP...P.Y.GQ.C.RRHGVPMSHVA.Q.T.EDFA..DYI.C.D.SNL.R.LN..SNQVKNCK | |
Retrocopy | STPTYHIGNPLCTPHYWGQDCRRRHGVPMSHVAQQITNEDFAMVDYIVCTDKSNL<RNLNIESNQVKNCK |
Parental | AKIELLGSYDPQKQLI-IEDPYYGNDADFEAVYQQCVRCCRAFLEKA |
AKIE..GSY.PQ..L...EDPYYGN...FE.VYQQ.VRCCRAFLEKA | |
Retrocopy | AKIEVFGSYNPQNNLLCTEDPYYGNGLNFETVYQQ*VRCCRAFLEKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 40 .62 RPM |
SRP017611_kidney | 0 .00 RPM | 35 .78 RPM |
SRP017611_liver | 0 .00 RPM | 14 .80 RPM |