RetrogeneDB ID: | retro_rnor_457 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:85933675..85933961(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Acp1 | ||
Ensembl ID: | ENSRNOG00000005260 | ||
Aliases: | None | ||
Description: | Low molecular weight phosphotyrosine protein phosphatase [Source:UniProtKB/Swiss-Prot;Acc:P41498] |
Percent Identity: | 71.88 % |
Parental protein coverage: | 59.01 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | RIDSAATSTYEVGNPP-DYRGQNCMKKHGIHMQHIARQITREDFATFDYILCMDESNLRDLNRKSNQVKN |
RIDS.ATSTYEV.....DY.GQNCM.KHGIHM.H.A.QIT.EDF.T.DY.LC.DESNLRDL.RK..QVK. | |
Retrocopy | RIDSVATSTYEVEXXX>DYGGQNCMRKHGIHMHHVAWQITKEDFDTLDYTLCRDESNLRDLSRKNDQVKS |
Parental | CKAKIELLGSYDPQKQLIIEDPYYGN |
CKAKIELLGS..PQ.QL.IE.P..GN | |
Retrocopy | CKAKIELLGSCEPQTQLTIEVPCSGN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .36 RPM | 10 .35 RPM |
SRP017611_kidney | 0 .07 RPM | 22 .75 RPM |
SRP017611_liver | 0 .27 RPM | 10 .56 RPM |