RetrogeneDB ID: | retro_dnov_81 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_1363:151821..152229(+) | ||
Located in intron of: | ENSDNOG00000002109 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000017382 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.35 % |
Parental protein coverage: | 86.08 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | AEAVFRKLVTDQNISDNWIIDSGAVSDWNVGRSPDPRAVSCLRNHGIKTAHNARQITTEDFATFDYILCM |
AEAVFRKLVTDQNISDN.I.DSGAVSD.NVG.SPDPRAV.CLRNHG..T..N.RQ.TTED.ATFDY..CM | |
Retrocopy | AEAVFRKLVTDQNISDN*IVDSGAVSDSNVGQSPDPRAVNCLRNHGVETTQNTRQVTTEDLATFDYKPCM |
Parental | DESNLRDLNNKSNRVKNCKAKIELLGSYDPQKQLIIEDPYYGNDSNFETVYQQCVRCCKAFLEKSQ |
DE.NLRDLNNK.N.VK..KAKIE.LGSYDPQKQLI.EDPYYGNDS.FETV.QQCVR.CKAFLEKSQ | |
Retrocopy | DETNLRDLNNKGNGVKSRKAKIEPLGSYDPQKQLIVEDPYYGNDSDFETVSQQCVRGCKAFLEKSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 57 .56 RPM |
SRP012922_cerebellum | 0 .00 RPM | 15 .81 RPM |
SRP012922_heart | 0 .00 RPM | 27 .84 RPM |
SRP012922_kidney | 0 .00 RPM | 41 .89 RPM |
SRP012922_liver | 0 .00 RPM | 23 .22 RPM |
SRP012922_lung | 0 .00 RPM | 36 .65 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 19 .56 RPM |
SRP012922_spleen | 0 .00 RPM | 43 .04 RPM |