RetrogeneDB ID: | retro_ocun_1859 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL019457:13832..14084(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACP1 | ||
Ensembl ID: | ENSOCUG00000012876 | ||
Aliases: | None | ||
Description: | acid phosphatase 1, soluble [Source:HGNC Symbol;Acc:122] |
Percent Identity: | 83.33 % |
Parental protein coverage: | 50.91 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | ARQVTKEDFATFDYILCMDESNLRDLNRKSNQVKNCKAKIELLGSYDPQKQLIIEDPYYGNDADFEAVYQ |
A.QVTKEDFAT.DYILC.DESNLRDLNRKSNQVKNCKAKIEL.GSYDP.KQLIIEDPYYGN..DFE.V.. | |
Retrocopy | ALQVTKEDFATSDYILCRDESNLRDLNRKSNQVKNCKAKIELFGSYDP*KQLIIEDPYYGNEVDFEPV*H |
Parental | QCVRCCRAFLEKAH |
Q.V.C.RA.LEKAH | |
Retrocopy | QHV*CYRALLEKAH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 40 .62 RPM |
SRP017611_kidney | 0 .00 RPM | 35 .78 RPM |
SRP017611_liver | 0 .00 RPM | 14 .80 RPM |