RetrogeneDB ID: | retro_mmus_717 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 11:60446923..60447181(+) | ||
Located in intron of: | ENSMUSG00000018415 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000083412 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Acp1 | ||
Ensembl ID: | ENSMUSG00000044573 | ||
Aliases: | Acp1, 4632432E04Rik, AI427468, Acp-1, LMW-PTP | ||
Description: | acid phosphatase 1, soluble [Source:MGI Symbol;Acc:MGI:87881] |
Percent Identity: | 77.91 % |
Parental protein coverage: | 54.43 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | HKARQITKEDFATFDYILCMDESNLRDLNRKSNQVKNCKAKIELLGSYDPQKQLIIEDPYYGNDSDFEVV |
H....IT.EDFATFDYIL...ES.LRDLNRK.NQVKNCKAK.ELLGS..PQKQLIIE.PYYGNDSDFEV. | |
Retrocopy | HNP*DITREDFATFDYILYRGESSLRDLNRKRNQVKNCKAKVELLGSHEPQKQLIIEVPYYGNDSDFEVL |
Parental | YQQCLRCCKAFLEKTY |
YQQCLRC.KAFLE... | |
Retrocopy | YQQCLRCYKAFLENIH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .05 RPM | 16 .31 RPM |
SRP007412_cerebellum | 0 .04 RPM | 4 .86 RPM |
SRP007412_heart | 0 .00 RPM | 10 .06 RPM |
SRP007412_kidney | 0 .02 RPM | 11 .45 RPM |
SRP007412_liver | 0 .03 RPM | 19 .03 RPM |
SRP007412_testis | 0 .14 RPM | 11 .53 RPM |