RetrogeneDB ID: | retro_mmul_1575 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 20:15978763..15979174(-) | ||
Located in intron of: | ENSMMUG00000005919 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.16694 | ||
Ensembl ID: | ENSMMUG00000017097 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 53.96 % |
Parental protein coverage: | 86.08 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 3 |
Parental | EQATKSVLFVC-LGNICRSPIAEAVFRKLVTDQ-NISENWVIDSGAVSD-WNVGRSPDPRAVSCLRNHGI |
EQ.....LFVC.LG.I..S..AEA..RK.V....N.S.NW.IDSGA..D..NVG.....RA.SCLRN.GI | |
Retrocopy | EQGPVVGLFVC>LGDIWQSSTAEAILRKSVDNK>NVSGNWIIDSGAALD>ENVG*PLKARALSCLRNCGI |
Parental | HTAHKARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSYDPQKQLIIEDPYYGNDSD |
..A.K...I.K..F...DYI..MDES.L...NRK.N.VK...AKI.LLG...PQ..LI.E.PY.GNDSD | |
Retrocopy | NQAIK*GRIIKDVFLACDYI*YMDESKLGYWNRKDN*VKKYRAKIGLLGR*EPQTELITENPY*GNDSD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 13 .33 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 19 .04 RPM |
SRP007412_cerebellum | 0 .00 RPM | 8 .72 RPM |
SRP007412_heart | 0 .06 RPM | 8 .66 RPM |
SRP007412_kidney | 0 .00 RPM | 13 .73 RPM |
SRP007412_liver | 0 .00 RPM | 11 .95 RPM |
SRP007412_testis | 0 .04 RPM | 7 .92 RPM |