RetrogeneDB ID: | retro_dnov_474 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_5138:283444..283913(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000017382 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 59.38 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISDNWIIDSGAVSDWNVGRSPDPRAVSCLRNHGIK |
..EQA.KS.LFVCLGN.CR.P.AE.VFRKLVTDQNI.DNW.ID..A.S....G...D.........H... | |
Retrocopy | LTEQAYKSLLFVCLGNLCRLPTAETVFRKLVTDQNILDNWSIDNAAISTCEMGNPADYQGQNYMKKHDNP |
Parental | TAHNARQITTEDFATFDYILCMDESNLRDLNNKSNRVK-NCKAKIELLGSYDPQKQLIIEDPYY-GNDSN |
....A.Q.TTED.A...YI.CMDE.NLRDL.NK....K..CKAKIELL.SY.PQK.L.IE.P...GND.. | |
Retrocopy | MNPIAQQFTTEDSAACGYIPCMDENNLRDL-NKKDKLK<DCKAKIELLESYEPQKRLLIEYPVV<GNDFD |
Parental | FETVYQQCVRCCKAFLEKSQ |
F.TVYQ..VRCCK.FLEKSQ | |
Retrocopy | FDTVYQ*WVRCCKTFLEKSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 57 .56 RPM |
SRP012922_cerebellum | 0 .00 RPM | 15 .81 RPM |
SRP012922_heart | 0 .00 RPM | 27 .84 RPM |
SRP012922_kidney | 0 .00 RPM | 41 .89 RPM |
SRP012922_liver | 0 .00 RPM | 23 .22 RPM |
SRP012922_lung | 0 .00 RPM | 36 .65 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 19 .56 RPM |
SRP012922_spleen | 0 .00 RPM | 43 .04 RPM |