RetrogeneDB ID: | retro_dnov_650 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_7260:164604..165077(+) | ||
Located in intron of: | ENSDNOG00000010734 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000017382 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 61.64 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISDNWIIDSGAVSDWNVGRSPDPRAV-SCLRNHGI |
MAE...K.VLFVCLGNI..SP.A.A.FRKL.TD.NISDNW..DS.A.S.......PD......C.....I | |
Retrocopy | MAE*VPK*VLFVCLGNIGQSPNAKAIFRKLITDKNISDNWRLDSAATSTYEIESPPDYQGK<NCMKKYDI |
Parental | KTAHNARQITTEDFATFDYILCMDESNLRDLNNKSNRVKNCKAKIELLGSYDPQKQLIIEDPYYGNDSNF |
...H.A.QITTEDFATF.YIL.MD..NL...N.K.N.V.NCKAKI.LLGS.D.QKQLI.ED..YGNDS.. | |
Retrocopy | LMNHIAWQITTEDFATFYYILGMDDNNLSY*NKKGNQVTNCKAKIGLLGSNDTQKQLISEDSFYGNDSDL |
Parental | ETVYQQCVRCCKAFLEKSQ |
.TV.QQCV.C.KAFLEKSQ | |
Retrocopy | KTVCQQCVGCGKAFLEKSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 57 .56 RPM |
SRP012922_cerebellum | 0 .00 RPM | 15 .81 RPM |
SRP012922_heart | 0 .00 RPM | 27 .84 RPM |
SRP012922_kidney | 0 .00 RPM | 41 .89 RPM |
SRP012922_liver | 0 .00 RPM | 23 .22 RPM |
SRP012922_lung | 0 .00 RPM | 36 .65 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 19 .56 RPM |
SRP012922_spleen | 0 .00 RPM | 43 .04 RPM |