Parental gene:

ENSCHOG00000003891

Aliases:None
Description:None
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_5310:11584..28434(+)


>ENSCHOG00000003891
ATGGCAGCCCAACCGCCCAAGTCGGTGCTGTTTGTATGTTTGGGTAACATTTGTCGATCACCCATTGCAGAAGCAGTTTT
CAGAAAACTTGTAACTGATCAAAATATTTCAGATAATTGGATCATTGACAGTGGTGCCGTTTCTGACTGGAATGTGGGCC
GGTCACCAGATCCAAGAGCTGTAAGCTGCCTAAGAAATCATGACAGTAATACAGCCCATAAAGCAAGACAGGTTACCAAA
GAAGACTTTGCCACATTTGATTATATACTGTGTATGGATGAAAGCAATCTGAGAGATCTGAATAGAAAAGGTAGTGCAGT
TAAAAACCGCAAAGCGAAAATTGAACTACTTGGGAGCTATGATCCACAAAAACAACTTATTATTGAGGATCCCTATTATG
GGAATGACTCCGACTTTGAGACTGTTTATCAGCAGTGTGTTAGGTGCTGCAAAGCATTTTTGGAGAAGTCACAGTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009554 possible_ortholog 2 retrogenes
retro_amel_705, retro_amel_761,
Bos taurus ENSBTAG00000020498 possible_ortholog 4 retrogenes
retro_btau_1085, retro_btau_1099, retro_btau_1695, retro_btau_421,
Canis familiaris ENSCAFG00000030097 possible_ortholog 1 retrogene
retro_cfam_1126,
Callithrix jacchus ENSCJAG00000011663 possible_ortholog 5 retrogenes
retro_cjac_1226, retro_cjac_2082, retro_cjac_2162, retro_cjac_405, retro_cjac_609,
Cavia porcellus ENSCPOG00000002862 possible_ortholog 4 retrogenes
retro_cpor_215, retro_cpor_614, retro_cpor_678, retro_cpor_868,
Dasypus novemcinctus ENSDNOG00000017382 possible_ortholog 32 retrogenes
retro_dnov_1166, retro_dnov_1213, retro_dnov_1234, retro_dnov_1255, retro_dnov_1302, retro_dnov_136, retro_dnov_1373, retro_dnov_1393, retro_dnov_1499, retro_dnov_1553, retro_dnov_1601, retro_dnov_1685, retro_dnov_1709, retro_dnov_1732, retro_dnov_1895, retro_dnov_1937, retro_dnov_1950, retro_dnov_2320, retro_dnov_2349, retro_dnov_2509, retro_dnov_2582, retro_dnov_297, retro_dnov_312, retro_dnov_355, retro_dnov_474, retro_dnov_501, retro_dnov_535, retro_dnov_650, retro_dnov_768, retro_dnov_81, retro_dnov_830, retro_dnov_987,
Dipodomys ordii ENSDORG00000016469 possible_ortholog 6 retrogenes
retro_dord_112, retro_dord_156, retro_dord_383, retro_dord_410, retro_dord_541, retro_dord_55,
Equus caballus ENSECAG00000010079 possible_ortholog 1 retrogene
retro_ecab_135,
Erinaceus europaeus ENSEEUG00000015468 possible_ortholog 1 retrogene
retro_eeur_574,
Echinops telfairi ENSETEG00000013764 possible_ortholog 18 retrogenes
retro_etel_100, retro_etel_1034, retro_etel_110, retro_etel_1204, retro_etel_1655, retro_etel_1718, retro_etel_1824, retro_etel_1861, retro_etel_1940, retro_etel_2133, retro_etel_230, retro_etel_343, retro_etel_398, retro_etel_420, retro_etel_679, retro_etel_797, retro_etel_82, retro_etel_958,
Felis catus ENSFCAG00000026717 possible_ortholog 1 retrogene
retro_fcat_1472,
Homo sapiens ENSG00000143727 possible_ortholog 5 retrogenes
retro_hsap_1627, retro_hsap_1666, retro_hsap_1667, retro_hsap_529, retro_hsap_603,
Gorilla gorilla ENSGGOG00000015577 possible_ortholog 5 retrogenes
retro_ggor_1228, retro_ggor_1256, retro_ggor_485, retro_ggor_532, retro_ggor_72,
Loxodonta africana ENSLAFG00000002966 possible_ortholog 4 retrogenes
retro_lafr_1053, retro_lafr_1227, retro_lafr_336, retro_lafr_916,
Macropus eugenii ENSMEUG00000010733 ortholog_one2many 3 retrogenes
retro_meug_1736, retro_meug_706, retro_meug_806,
Myotis lucifugus ENSMLUG00000017707 possible_ortholog 4 retrogenes
retro_mluc_133, retro_mluc_1970, retro_mluc_548, retro_mluc_686,
Macaca mulatta ENSMMUG00000017097 possible_ortholog 2 retrogenes
retro_mmul_1575, retro_mmul_2447,
Monodelphis domestica ENSMODG00000025764 ortholog_many2many 3 retrogenes
retro_mdom_236, retro_mdom_292, retro_mdom_364,
Mustela putorius furo ENSMPUG00000012787 possible_ortholog 2 retrogenes
retro_mputfur_1420, retro_mputfur_1619,
Mus musculus ENSMUSG00000044573 possible_ortholog 11 retrogenes
retro_mmus_1041, retro_mmus_1103, retro_mmus_1230, retro_mmus_1261, retro_mmus_2133, retro_mmus_2143, retro_mmus_2155, retro_mmus_2969, retro_mmus_3690, retro_mmus_455, retro_mmus_717,
Nomascus leucogenys ENSNLEG00000008359 possible_ortholog 6 retrogenes
retro_nleu_1784, retro_nleu_2230, retro_nleu_2683, retro_nleu_2792, retro_nleu_2821, retro_nleu_2915,
Oryctolagus cuniculus ENSOCUG00000012876 possible_ortholog 11 retrogenes
retro_ocun_1192, retro_ocun_1302, retro_ocun_1328, retro_ocun_1347, retro_ocun_1358, retro_ocun_1501, retro_ocun_1610, retro_ocun_1743, retro_ocun_1744, retro_ocun_1859, retro_ocun_1860,
Otolemur garnettii ENSOGAG00000000301 possible_ortholog 5 retrogenes
retro_ogar_1665, retro_ogar_2357, retro_ogar_3182, retro_ogar_426, retro_ogar_471,
Procavia capensis ENSPCAG00000012054 possible_ortholog 1 retrogene
retro_pcap_312,
Pongo abelii ENSPPYG00000012694 possible_ortholog 6 retrogenes
retro_pabe_1374, retro_pabe_1406, retro_pabe_1748, retro_pabe_220, retro_pabe_543, retro_pabe_588,
Pan troglodytes ENSPTRG00000011605 possible_ortholog 5 retrogenes
retro_ptro_1129, retro_ptro_2959, retro_ptro_3050, retro_ptro_3080, retro_ptro_446,
Pteropus vampyrus ENSPVAG00000013387 possible_ortholog 5 retrogenes
retro_pvam_1117, retro_pvam_1401, retro_pvam_28, retro_pvam_781, retro_pvam_944,
Rattus norvegicus ENSRNOG00000005260 possible_ortholog 11 retrogenes
retro_rnor_1201, retro_rnor_1302, retro_rnor_1303, retro_rnor_1476, retro_rnor_1802, retro_rnor_2079, retro_rnor_2382, retro_rnor_2569, retro_rnor_2772, retro_rnor_449, retro_rnor_457,
Sarcophilus harrisii ENSSHAG00000005216 possible_ortholog 4 retrogenes
retro_shar_306, retro_shar_529, retro_shar_655, retro_shar_772,
Ictidomys tridecemlineatus ENSSTOG00000002520 possible_ortholog 3 retrogenes
retro_itri_1010, retro_itri_1581, retro_itri_821,
Tarsius syrichta ENSTSYG00000004864 possible_ortholog 7 retrogenes
retro_tsyr_1013, retro_tsyr_1214, retro_tsyr_1477, retro_tsyr_1482, retro_tsyr_209, retro_tsyr_444, retro_tsyr_523,
Tursiops truncatus ENSTTRG00000010770 possible_ortholog 4 retrogenes
retro_ttru_130, retro_ttru_1934, retro_ttru_293, retro_ttru_392,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_chof_17 85.71 75.32
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2. retro_chof_66 70.32 98.10
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3. retro_chof_80 58.62 52.53
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4. retro_chof_83 70.00 100.00
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5. retro_chof_119 69.33 94.30
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6. retro_chof_121 62.92 56.33
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7. retro_chof_142 82.14 53.16
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8. retro_chof_169 69.81 100.00
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9. retro_chof_174 70.25 100.00
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10. retro_chof_245 67.50 100.00
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11. retro_chof_261 75.89 87.97
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12. retro_chof_262 77.14 87.97
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13. retro_chof_319 99.37 100.00
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14. retro_chof_377 71.24 96.84
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15. retro_chof_460 79.75 100.00
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16. retro_chof_598 67.63 86.71
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17. retro_chof_603 71.88 100.00
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18. retro_chof_649 69.23 74.05
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19. retro_chof_650 53.23 74.68
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20. retro_chof_727 68.12 100.00
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21. retro_chof_803 79.80 61.39
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22. retro_chof_842 64.42 99.37
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23. retro_chof_934 74.53 100.00
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24. retro_chof_939 74.81 85.44
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25. retro_chof_958 69.78 87.97
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26. retro_chof_962 60.00 71.52
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27. retro_chof_986 60.16 77.85
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28. retro_chof_991 74.05 100.00
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29. retro_chof_994 64.21 58.23
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30. retro_chof_999 66.43 89.87
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31. retro_chof_1010 68.00 63.29
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32. retro_chof_1053 73.08 97.47
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33. retro_chof_1073 64.22 67.72
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34. retro_chof_1099 74.47 87.34
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35. retro_chof_1100 74.12 51.90
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36. retro_chof_1144 65.75 91.14
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37. retro_chof_1190 66.67 100.00
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38. retro_chof_1259 70.86 95.57
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39. retro_chof_1265 71.07 100.00
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40. retro_chof_1275 69.17 75.32
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41. retro_chof_1330 74.05 100.00
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42. retro_chof_1351 76.04 60.13
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43. retro_chof_1359 91.01 56.33
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44. retro_chof_1389 66.95 73.42
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45. retro_chof_1390 68.18 68.99
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46. retro_chof_1412 71.88 99.37
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47. retro_chof_1444 64.05 94.30
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48. retro_chof_1447 74.84 100.00
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49. retro_chof_1508 73.28 73.42
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50. retro_chof_1567 67.52 73.42
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51. retro_chof_1570 58.49 67.09
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52. retro_chof_1593 65.62 81.01
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53. retro_chof_1632 73.12 99.37
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54. retro_chof_1633 71.21 82.91
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55. retro_chof_1658 70.19 64.56
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56. retro_chof_1684 69.62 100.00
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57. retro_chof_1698 63.16 60.13
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58. retro_chof_1716 76.13 97.47
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59. retro_chof_1799 68.71 100.00
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60. retro_chof_1802 86.75 51.90
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61. retro_chof_1815 59.03 89.24
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62. retro_chof_1833 57.93 89.24
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63. retro_chof_1838 66.67 68.35
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64. retro_chof_1864 63.53 51.90
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65. retro_chof_1941 68.63 62.66
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66. retro_chof_1956 72.14 87.97
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67. retro_chof_1993 71.58 60.13
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68. retro_chof_2012 63.44 58.23
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69. retro_chof_2041 68.00 77.85
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70. retro_chof_2044 68.42 95.57
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71. retro_chof_2091 70.50 87.34
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72. retro_chof_2165 72.50 100.00
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73. retro_chof_2192 70.83 60.13
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74. retro_chof_2208 65.31 92.41
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75. retro_chof_2228 70.62 100.00
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76. retro_chof_2259 66.89 92.41
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77. retro_chof_2344 68.29 50.63
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78. retro_chof_2378 64.13 56.96
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79. retro_chof_2384 77.01 55.06
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80. retro_chof_2443 69.81 100.00
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81. retro_chof_2478 71.88 100.00
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82. retro_chof_2512 77.55 61.39
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83. retro_chof_2532 62.73 100.00
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84. retro_chof_2542 67.11 92.41
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85. retro_chof_2551 77.85 100.00
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86. retro_chof_2622 61.54 73.42
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87. retro_chof_2636 60.67 56.33
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88. retro_chof_2643 54.35 56.96
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89. retro_chof_2653 73.29 100.00
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90. retro_chof_2654 68.42 84.18
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91. retro_chof_2678 83.13 52.53
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92. retro_chof_2701 67.52 98.73
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93. retro_chof_2705 74.21 100.00
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94. retro_chof_2707 72.59 85.44
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Download FASTA sequences of all ENSCHOG00000003891 retrocopies