RetrogeneDB - Parental gene ENSDNOG00000017382 details

							
>ENSDNOG00000017382
ATGGCAGAGCAGGCGACCAAGTCAGTGCTGTTCGTCTGTCTGGGTAACATTTGTCGGTCACCCATTGCAGAAGCAGTTTT

CAGAAAACTTGTAACTGATCAAAATATTTCAGATAATTGGATCATTGACAGTGGTGCTGTTTCTGACTGGAACGTGGGCC

GGTCACCAGATCCAAGAGCTGTAAGCTGCCTAAGAAATCATGGCATTAAAACAGCCCATAACGCAAGACAGATTACCACA

GAAGACTTTGCCACATTTGATTATATACTATGTATGGATGAAAGCAATCTGAGAGATTTGAATAACAAAAGTAATCGTGT

TAAAAACTGCAAAGCTAAAATTGAACTACTTGGAAGCTATGATCCACAAAAACAACTTATTATTGAAGATCCCTATTATG

GGAATGACTCCAACTTTGAGACTGTGTACCAGCAGTGTGTTAGGTGCTGCAAAGCATTTTTGGAGAAGTCACAGTAA

Library	Parental gene expression (RPM)
SRP012922_ascending_colon	57 .56 RPM
SRP012922_cerebellum	15 .81 RPM
SRP012922_heart	27 .84 RPM
SRP012922_kidney	41 .89 RPM
SRP012922_liver	23 .22 RPM
SRP012922_lung	36 .65 RPM
SRP012922_quadricep_muscle	19 .56 RPM
SRP012922_spleen	43 .04 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000009554	ortholog_many2many	2 retrogenes	retro_amel_705, retro_amel_761,
Bos taurus	ENSBTAG00000020498	ortholog_one2many	4 retrogenes	retro_btau_1085, retro_btau_1099, retro_btau_1695, retro_btau_421,
Canis familiaris	ENSCAFG00000030097	ortholog_one2many	1 retrogene	retro_cfam_1126,
Choloepus hoffmanni	ENSCHOG00000003891	possible_ortholog	94 retrogenes	retro_chof_1010, retro_chof_1053, retro_chof_1073, retro_chof_1099, retro_chof_1100, retro_chof_1144, retro_chof_119, retro_chof_1190, retro_chof_121, retro_chof_1259, retro_chof_1265, retro_chof_1275, retro_chof_1330, retro_chof_1351, retro_chof_1359, retro_chof_1389, retro_chof_1390, retro_chof_1412, retro_chof_142, retro_chof_1444, retro_chof_1447, retro_chof_1508, retro_chof_1567, retro_chof_1570, retro_chof_1593, retro_chof_1632, retro_chof_1633, retro_chof_1658, retro_chof_1684, retro_chof_169, retro_chof_1698, retro_chof_17, retro_chof_1716, retro_chof_174, retro_chof_1799, retro_chof_1802, retro_chof_1815, retro_chof_1833, retro_chof_1838, retro_chof_1864, retro_chof_1941, retro_chof_1956, retro_chof_1993, retro_chof_2012, retro_chof_2041, retro_chof_2044, retro_chof_2091, retro_chof_2165, retro_chof_2192, retro_chof_2208, retro_chof_2228, retro_chof_2259, retro_chof_2344, retro_chof_2378, retro_chof_2384, retro_chof_2443, retro_chof_245, retro_chof_2478, retro_chof_2512, retro_chof_2532, retro_chof_2542, retro_chof_2551, retro_chof_261, retro_chof_262, retro_chof_2622, retro_chof_2636, retro_chof_2643, retro_chof_2653, retro_chof_2654, retro_chof_2678, retro_chof_2701, retro_chof_2705, retro_chof_2707, retro_chof_319, retro_chof_377, retro_chof_460, retro_chof_598, retro_chof_603, retro_chof_649, retro_chof_650, retro_chof_66, retro_chof_727, retro_chof_80, retro_chof_803, retro_chof_83, retro_chof_842, retro_chof_934, retro_chof_939, retro_chof_958, retro_chof_962, retro_chof_986, retro_chof_991, retro_chof_994, retro_chof_999,
Callithrix jacchus	ENSCJAG00000011663	ortholog_one2many	5 retrogenes	retro_cjac_1226, retro_cjac_2082, retro_cjac_2162, retro_cjac_405, retro_cjac_609,
Cavia porcellus	ENSCPOG00000002862	ortholog_one2many	4 retrogenes	retro_cpor_215, retro_cpor_614, retro_cpor_678, retro_cpor_868,
Dipodomys ordii	ENSDORG00000016469	ortholog_one2many	6 retrogenes	retro_dord_112, retro_dord_156, retro_dord_383, retro_dord_410, retro_dord_541, retro_dord_55,
Equus caballus	ENSECAG00000010079	ortholog_one2many	1 retrogene	retro_ecab_135,
Erinaceus europaeus	ENSEEUG00000015468	ortholog_one2many	1 retrogene	retro_eeur_574,
Echinops telfairi	ENSETEG00000013764	ortholog_many2many	18 retrogenes	retro_etel_100, retro_etel_1034, retro_etel_110, retro_etel_1204, retro_etel_1655, retro_etel_1718, retro_etel_1824, retro_etel_1861, retro_etel_1940, retro_etel_2133, retro_etel_230, retro_etel_343, retro_etel_398, retro_etel_420, retro_etel_679, retro_etel_797, retro_etel_82, retro_etel_958,
Felis catus	ENSFCAG00000026717	ortholog_one2many	1 retrogene	retro_fcat_1472,
Homo sapiens	ENSG00000143727	ortholog_one2many	5 retrogenes	retro_hsap_1627, retro_hsap_1666, retro_hsap_1667, retro_hsap_529, retro_hsap_603,
Gorilla gorilla	ENSGGOG00000015577	ortholog_many2many	5 retrogenes	retro_ggor_1228, retro_ggor_1256, retro_ggor_485, retro_ggor_532, retro_ggor_72,
Loxodonta africana	ENSLAFG00000002966	ortholog_many2many	4 retrogenes	retro_lafr_1053, retro_lafr_1227, retro_lafr_336, retro_lafr_916,
Macropus eugenii	ENSMEUG00000010733	ortholog_one2many	3 retrogenes	retro_meug_1736, retro_meug_706, retro_meug_806,
Myotis lucifugus	ENSMLUG00000017707	ortholog_many2many	4 retrogenes	retro_mluc_133, retro_mluc_1970, retro_mluc_548, retro_mluc_686,
Macaca mulatta	ENSMMUG00000017097	ortholog_one2many	2 retrogenes	retro_mmul_1575, retro_mmul_2447,
Monodelphis domestica	ENSMODG00000025764	ortholog_many2many	3 retrogenes	retro_mdom_236, retro_mdom_292, retro_mdom_364,
Mustela putorius furo	ENSMPUG00000012787	ortholog_one2many	2 retrogenes	retro_mputfur_1420, retro_mputfur_1619,
Mus musculus	ENSMUSG00000044573	ortholog_one2many	11 retrogenes	retro_mmus_1041, retro_mmus_1103, retro_mmus_1230, retro_mmus_1261, retro_mmus_2133, retro_mmus_2143, retro_mmus_2155, retro_mmus_2969, retro_mmus_3690, retro_mmus_455, retro_mmus_717,
Nomascus leucogenys	ENSNLEG00000008359	ortholog_many2many	6 retrogenes	retro_nleu_1784, retro_nleu_2230, retro_nleu_2683, retro_nleu_2792, retro_nleu_2821, retro_nleu_2915,
Oryctolagus cuniculus	ENSOCUG00000012876	ortholog_one2many	11 retrogenes	retro_ocun_1192, retro_ocun_1302, retro_ocun_1328, retro_ocun_1347, retro_ocun_1358, retro_ocun_1501, retro_ocun_1610, retro_ocun_1743, retro_ocun_1744, retro_ocun_1859, retro_ocun_1860,
Otolemur garnettii	ENSOGAG00000000301	ortholog_one2many	5 retrogenes	retro_ogar_1665, retro_ogar_2357, retro_ogar_3182, retro_ogar_426, retro_ogar_471,
Procavia capensis	ENSPCAG00000012054	ortholog_one2many	1 retrogene	retro_pcap_312,
Pongo abelii	ENSPPYG00000012694	ortholog_one2many	6 retrogenes	retro_pabe_1374, retro_pabe_1406, retro_pabe_1748, retro_pabe_220, retro_pabe_543, retro_pabe_588,
Pan troglodytes	ENSPTRG00000011605	ortholog_one2many	5 retrogenes	retro_ptro_1129, retro_ptro_2959, retro_ptro_3050, retro_ptro_3080, retro_ptro_446,
Pteropus vampyrus	ENSPVAG00000013387	ortholog_one2many	5 retrogenes	retro_pvam_1117, retro_pvam_1401, retro_pvam_28, retro_pvam_781, retro_pvam_944,
Rattus norvegicus	ENSRNOG00000005260	ortholog_one2many	11 retrogenes	retro_rnor_1201, retro_rnor_1302, retro_rnor_1303, retro_rnor_1476, retro_rnor_1802, retro_rnor_2079, retro_rnor_2382, retro_rnor_2569, retro_rnor_2772, retro_rnor_449, retro_rnor_457,
Sarcophilus harrisii	ENSSHAG00000005216	possible_ortholog	4 retrogenes	retro_shar_306, retro_shar_529, retro_shar_655, retro_shar_772,
Ictidomys tridecemlineatus	ENSSTOG00000002520	ortholog_one2many	3 retrogenes	retro_itri_1010, retro_itri_1581, retro_itri_821,
Tarsius syrichta	ENSTSYG00000004864	ortholog_one2many	7 retrogenes	retro_tsyr_1013, retro_tsyr_1214, retro_tsyr_1477, retro_tsyr_1482, retro_tsyr_209, retro_tsyr_444, retro_tsyr_523,
Tursiops truncatus	ENSTTRG00000010770	ortholog_one2many	4 retrogenes	retro_ttru_130, retro_ttru_1934, retro_ttru_293, retro_ttru_392,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_dnov_81	82.35	86.08	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_dnov_136	70.50	86.08	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_dnov_297	68.55	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_dnov_312	66.67	67.72	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_dnov_355	65.54	93.04	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_dnov_474	59.38	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_dnov_501	61.54	72.78	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_dnov_535	79.05	66.46	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_dnov_650	61.64	100.00	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_dnov_768	64.29	62.03	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_dnov_830	68.57	87.34	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_dnov_987	64.38	100.00	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_dnov_1166	66.04	100.00	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_dnov_1213	65.74	67.09	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_dnov_1234	54.37	65.19	Please wait, loading	Please wait, loading	Please wait, loading
16.	retro_dnov_1255	63.50	85.44	Please wait, loading	Please wait, loading	Please wait, loading
17.	retro_dnov_1302	68.09	59.49	Please wait, loading	Please wait, loading	Please wait, loading
18.	retro_dnov_1373	59.09	55.70	Please wait, loading	Please wait, loading	Please wait, loading
19.	retro_dnov_1393	54.76	52.53	Please wait, loading	Please wait, loading	Please wait, loading
20.	retro_dnov_1499	63.81	65.19	Please wait, loading	Please wait, loading	Please wait, loading
21.	retro_dnov_1553	55.00	62.03	Please wait, loading	Please wait, loading	Please wait, loading
22.	retro_dnov_1601	56.44	63.29	Please wait, loading	Please wait, loading	Please wait, loading
23.	retro_dnov_1685	60.00	96.84	Please wait, loading	Please wait, loading	Please wait, loading
24.	retro_dnov_1709	51.14	55.06	Please wait, loading	Please wait, loading	Please wait, loading
25.	retro_dnov_1732	67.06	53.80	Please wait, loading	Please wait, loading	Please wait, loading
26.	retro_dnov_1895	67.70	100.00	Please wait, loading	Please wait, loading	Please wait, loading
27.	retro_dnov_1937	64.00	91.14	Please wait, loading	Please wait, loading	Please wait, loading
28.	retro_dnov_1950	62.79	81.65	Please wait, loading	Please wait, loading	Please wait, loading
29.	retro_dnov_2320	65.96	87.97	Please wait, loading	Please wait, loading	Please wait, loading
30.	retro_dnov_2349	72.78	100.00	Please wait, loading	Please wait, loading	Please wait, loading
31.	retro_dnov_2509	63.98	100.00	Please wait, loading	Please wait, loading	Please wait, loading
32.	retro_dnov_2582	57.98	74.68	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSDNOG00000017382 retrocopies

Parental gene:	ENSDNOG00000017382
Aliases:	None
Description:	None
Organism:	*Armadillo (Dasypus novemcinctus)*
Coordinates:	scaffold_7666:16311..34287(-)

Parental gene:

ENSDNOG00000017382