RetrogeneDB ID: | retro_dnov_1302 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_177880:4059..4341(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000017382 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.09 % |
Parental protein coverage: | 59.49 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | RNHGIKTAHNARQITTEDFATFDYILCMDESNLRDLNNKSNRVKNCKAKIELLGSYDPQKQLIIEDPYYG |
R.H.I.....A.Q.T.EDF.TFD..LC.DESNLRDLN.K....KN...KIELLGSYD.QKQLIIE..Y.G | |
Retrocopy | RKHDIPMNYIALQVTKEDFTTFDHLLCTDESNLRDLNRKVIKFKNGNDKIELLGSYDVQKQLIIENSYCG |
Parental | NDSNFETVYQQCVRCCKAFLEKSQ |
NDS.FETVYQ..VRC.KAFLEKSQ | |
Retrocopy | NDSDFETVYQP*VRCFKAFLEKSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 57 .56 RPM |
SRP012922_cerebellum | 0 .00 RPM | 15 .81 RPM |
SRP012922_heart | 0 .00 RPM | 27 .84 RPM |
SRP012922_kidney | 0 .00 RPM | 41 .89 RPM |
SRP012922_liver | 0 .00 RPM | 23 .22 RPM |
SRP012922_lung | 0 .00 RPM | 36 .65 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 19 .56 RPM |
SRP012922_spleen | 0 .00 RPM | 43 .04 RPM |