RetrogeneDB ID: | retro_mmus_1261 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 14:32035993..32036318(-) | ||
Located in intron of: | ENSMUSG00000021903 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Acp1 | ||
Ensembl ID: | ENSMUSG00000044573 | ||
Aliases: | Acp1, 4632432E04Rik, AI427468, Acp-1, LMW-PTP | ||
Description: | acid phosphatase 1, soluble [Source:MGI Symbol;Acc:MGI:87881] |
Percent Identity: | 60.18 % |
Parental protein coverage: | 68.99 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | SVLFVC-LGNICRSPIAEAVFRKLVTDEKVSDNWRI-DSAATSTYEVGN-PPDYRGQNCMRKHGIHMQHI |
SVLF.C...NI..SP.AE.V.RKLVTD..VSD.WRI..S.ATS.YEVG..PP.Y.GQ..MR.HG..M.H. | |
Retrocopy | SVLFMC<SCNIWCSPTAEVVSRKLVTDGSVSDSWRI<SSTATSAYEVGS<PPYYGGQSGMREHGTPMSHV |
Parental | ARQITKEDFATFDYILCMDESNLRDLNRKSNQ-VKNCKAKIEL |
ARQ...EDFA.F.YILC.D...L.DL..K.NQ..KN..AK.EL | |
Retrocopy | ARQTMREDFAMFNYILCVDGNKLKDLKGKGNQ>LKNGRAKTEL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 16 .31 RPM |
SRP007412_cerebellum | 0 .09 RPM | 4 .86 RPM |
SRP007412_heart | 0 .09 RPM | 10 .06 RPM |
SRP007412_kidney | 0 .00 RPM | 11 .45 RPM |
SRP007412_liver | 0 .03 RPM | 19 .03 RPM |
SRP007412_testis | 0 .00 RPM | 11 .53 RPM |