RetrogeneDB ID: | retro_dnov_1601 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_245550:330..629(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000017382 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 56.44 % |
Parental protein coverage: | 63.29 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISDNWIIDSGAVSDWNVGRSPDPRAVSCLRNHGIK |
MAEQA.K.VLFVCLG.IC.SP.AEAVFR.L.T...I.D.W.ID....S....G..PD.....C...H.I. | |
Retrocopy | MAEQASKLVLFVCLGDICQSPTAEAVFRELITA*HILDTWRIDCASPST*ETGNPPDYQGPNCIKKHDIP |
Parental | TAH-NARQITTEDFATFDYILCMDESNLRDL |
..H....Q.TTEDFATFD.ILCMDE.NLR.. | |
Retrocopy | MNH<HCLQVTTEDFATFDCILCMDENNLRGM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 57 .56 RPM |
SRP012922_cerebellum | 1 .10 RPM | 15 .81 RPM |
SRP012922_heart | 1 .16 RPM | 27 .84 RPM |
SRP012922_kidney | 0 .00 RPM | 41 .89 RPM |
SRP012922_liver | 0 .00 RPM | 23 .22 RPM |
SRP012922_lung | 0 .31 RPM | 36 .65 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 19 .56 RPM |
SRP012922_spleen | 0 .11 RPM | 43 .04 RPM |