RetrogeneDB ID: | retro_ecab_135 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 1:79087655..79087916(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACP1 | ||
Ensembl ID: | ENSECAG00000010079 | ||
Aliases: | None | ||
Description: | acid phosphatase 1, soluble [Source:HGNC Symbol;Acc:122] |
Percent Identity: | 60.23 % |
Parental protein coverage: | 53.33 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | IAEAVFRKLVTDQNISDNWRIDSAATSTYEIGNPPDYRGQSCMKRHGIPMSHTARQVTKEDFATFDYILC |
I...VF.KLVT.QN..DNWRID.A.T..YE.GNP..Y.GQ...K.H.I.M.H.A...T.ED..TF.YILC | |
Retrocopy | ITQGVFKKLVTGQNVPDNWRIDNAVTFMYETGNPAHY*GQNWTKKHSI-MNHIAQEDTQEDSDTFNYILC |
Parental | MDESNLRDLNRKSNQVKN |
MDES.LR.L.RKSNQ..N | |
Retrocopy | MDESDLRHLIRKSNQINN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 6 .14 RPM |
SRP021940_cerebellum | 0 .00 RPM | 13 .87 RPM |
SRP021940_embryo | 0 .00 RPM | 26 .44 RPM |
SRP021940_placental_villous | 0 .00 RPM | 18 .09 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 10 .98 RPM |
SRP021940_testis | 0 .00 RPM | 108 .96 RPM |