RetrogeneDB ID: | retro_dnov_1685 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_2664:187230..187677(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000017382 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60. % |
Parental protein coverage: | 96.84 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISDNWIIDSGAVSDWNVGRSPDPRAVS-CLRNHGI |
MAEQA.......CLGNIC.SP.AEAVF.KLVTDQNIS.NW.IDS...S.......PD.R....C...H.. | |
Retrocopy | MAEQAPNA----CLGNICPSPTAEAVFTKLVTDQNISHNWRIDSAVTSTCETRNPPDYRRTK>CMKKHDS |
Parental | KTAHNARQITTEDFATFDYILCMDESNLRDLNNKSNRVK-NCKAKIELLGSYDPQKQLIIEDPYYGNDSN |
...H.A.QITTE.FATFD..L..DESNLRDL....N.VK.NCKAK..LLG.YDPQKQ..IEDPY.G.D.. | |
Retrocopy | LMNHIAWQITTEHFATFDSTLYIDESNLRDLSIEGNHVK<NCKAKFKLLGIYDPQKQRNIEDPYCGSDFD |
Parental | FETVYQQCVRCCKAF |
FETVYQQ.VR....F | |
Retrocopy | FETVYQQYVRYYEVF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 57 .56 RPM |
SRP012922_cerebellum | 0 .00 RPM | 15 .81 RPM |
SRP012922_heart | 0 .00 RPM | 27 .84 RPM |
SRP012922_kidney | 0 .00 RPM | 41 .89 RPM |
SRP012922_liver | 0 .00 RPM | 23 .22 RPM |
SRP012922_lung | 0 .00 RPM | 36 .65 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 19 .56 RPM |
SRP012922_spleen | 0 .00 RPM | 43 .04 RPM |