RetrogeneDB ID: | retro_hsap_1667 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 16:16354726..16355134(-) | ||
Located in intron of: | ENSG00000103226 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000263029 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACP1 | ||
Ensembl ID: | ENSG00000143727 | ||
Aliases: | ACP1, HAAP | ||
Description: | acid phosphatase 1, soluble [Source:HGNC Symbol;Acc:122] |
Percent Identity: | 54.29 % |
Parental protein coverage: | 86.08 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 4 |
Parental | EQATKSVLFVCLG-NICRSPIAEAVFRKLVTDQNISENWVIDSGAVSD-WNVGRSPDPRAVSCLRNHGI- |
EQ.....LFVC.G..I..SP.AEA..RK.....N.S.NW..DS.A..D..NVG.....RA.SCLRN.GI. | |
Retrocopy | EQGPVVGLFVCSG>DIWQSPTAEAILRKSADNKNVSGNWIVDSRAALD>ENVG*PLKARALSCLRNCGI< |
Parental | HTAHKARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSYDPQKQ-LIIEDPYYGNDSD |
..A.K...I.K..F...DYI..MDES.L.D.NRK.N.VK.CKAKIELLG...PQ...LI.E.PY.GNDSD | |
Retrocopy | YQAIK*VRIIKDVFLACDYI*YMDESKLGDWNRKGN*VKKCKAKIELLGR*EPQCN<LITEKPY*GNDSD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 34 .97 RPM |
bodymap2_adrenal | 0 .00 RPM | 60 .12 RPM |
bodymap2_brain | 0 .00 RPM | 61 .55 RPM |
bodymap2_breast | 0 .04 RPM | 40 .41 RPM |
bodymap2_colon | 0 .00 RPM | 42 .79 RPM |
bodymap2_heart | 0 .00 RPM | 45 .84 RPM |
bodymap2_kidney | 0 .00 RPM | 79 .43 RPM |
bodymap2_liver | 0 .00 RPM | 48 .01 RPM |
bodymap2_lung | 0 .00 RPM | 51 .25 RPM |
bodymap2_lymph_node | 0 .00 RPM | 56 .48 RPM |
bodymap2_ovary | 0 .00 RPM | 60 .86 RPM |
bodymap2_prostate | 0 .00 RPM | 61 .45 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 32 .47 RPM |
bodymap2_testis | 0 .04 RPM | 88 .80 RPM |
bodymap2_thyroid | 0 .00 RPM | 88 .68 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 61 .15 RPM |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .03 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .02 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |