RetrogeneDB ID: | retro_dnov_1255 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_170177:475..879(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000017382 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.5 % |
Parental protein coverage: | 85.44 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | EAVFRKLVTDQNISDNWIIDSGAVSDWNVGRSPDPRAVSCLRNHGIKTAHNARQITTEDFATFDYILCMD |
.AVFRK.V.DQNISDNW..DS...S....G..PD.R...C.........H.ARQ.TT..FATFD.ILC.D | |
Retrocopy | KAVFRKPVADQNISDNWRTDSAIISTYETGNPPDYRGQNCMKKREVLMSHGARQVTTDSFATFDNILCID |
Parental | ESNLRDLNNKSNRVKNCKAKIELLGSYDPQKQLIIED-PYYGNDSNFETVY-QQCVRCCKAFLEKSQ |
E.NLRDLN.K.N.VKNCKAK.ELL.SYDPQKQLIIE..P..G....FETVY.QQCV..CKAFLEKSQ | |
Retrocopy | ENNLRDLNKKGNQVKNCKAKTELLRSYDPQKQLIIEN>PSMGM-TDFETVY>QQCVGHCKAFLEKSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 57 .56 RPM |
SRP012922_cerebellum | 0 .00 RPM | 15 .81 RPM |
SRP012922_heart | 0 .00 RPM | 27 .84 RPM |
SRP012922_kidney | 0 .00 RPM | 41 .89 RPM |
SRP012922_liver | 0 .00 RPM | 23 .22 RPM |
SRP012922_lung | 0 .00 RPM | 36 .65 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 19 .56 RPM |
SRP012922_spleen | 0 .00 RPM | 43 .04 RPM |