RetrogeneDB ID: | retro_ocun_1860 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL019457:30486..30809(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACP1 | ||
Ensembl ID: | ENSOCUG00000012876 | ||
Aliases: | None | ||
Description: | acid phosphatase 1, soluble [Source:HGNC Symbol;Acc:122] |
Percent Identity: | 79.82 % |
Parental protein coverage: | 65.45 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | EIGNPPDYRGQECMRRHGVPMSHVARQVTKEDFATFDYILCMDESNLRDLNRKSNQVKNCKAKIELLGSY |
EIGN.PDY.G.E.M.R.GVPMSH.A.QVTKEDFAT.DYILC.DESNLRDLNRKSNQVKNCKAKIEL.GSY | |
Retrocopy | EIGNLPDYSGHEFMWRQGVPMSHMALQVTKEDFATSDYILCRDESNLRDLNRKSNQVKNCKAKIELFGSY |
Parental | DPQKQLIIE-DPYYGNDADFEAVYQQCVRCCRAFLEKAH |
DP.KQLIIE.DPYYGN..DFE.V..Q.V.C.RA.LEKAH | |
Retrocopy | DP*KQLIIE<DPYYGNEVDFEPV*HQHV*CYRALLEKAH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 40 .62 RPM |
SRP017611_kidney | 0 .00 RPM | 35 .78 RPM |
SRP017611_liver | 0 .00 RPM | 14 .80 RPM |