RetrogeneDB ID: | retro_btau_421 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 11:11283275..11283749(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000008035 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACP1 | ||
Ensembl ID: | ENSBTAG00000020498 | ||
Aliases: | None | ||
Description: | Low molecular weight phosphotyrosine protein phosphatase [Source:UniProtKB/Swiss-Prot;Acc:P11064] |
Percent Identity: | 93.04 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAEQVTKSVLFVCLGNICRSPIAEAVFRKLVTDQNISDNWRIDSAATSTYELGNPPDFRGQACMRKHGIP |
MAEQVTKSVLFVCLGNIC.SPIAEAVFRKLVTDQNISDNWRIDSAATSTYELGNPPD.RGQACM.KHGIP | |
Retrocopy | MAEQVTKSVLFVCLGNICQSPIAEAVFRKLVTDQNISDNWRIDSAATSTYELGNPPDYRGQACMKKHGIP |
Parental | MSHVARQVTKEDFVTFDYILCMDESNLRDLNRKSNQVKNCRAKIELLGSYDPQKQLIIEDPYYGNDADFE |
MSHVARQVTKEDF.TFDYILCMDESNLRD.NRKSNQVKNCRAKI.LLG.YDPQKQLIIEDPYYG..ADFE | |
Retrocopy | MSHVARQVTKEDFDTFDYILCMDESNLRDMNRKSNQVKNCRAKIKLLGNYDPQKQLIIEDPYYGDNADFE |
Parental | TVYQQCVRCCRAFLEKVR |
.VYQQCVRCCRAFL.KVR | |
Retrocopy | AVYQQCVRCCRAFLGKVR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 28 .33 RPM |
ERP005899_muscle | 0 .00 RPM | 35 .58 RPM |
SRP017611_brain | 0 .05 RPM | 42 .07 RPM |
SRP017611_kidney | 0 .24 RPM | 45 .05 RPM |
SRP017611_liver | 0 .00 RPM | 27 .86 RPM |
SRP030211_testis | 0 .09 RPM | 89 .93 RPM |