RetrogeneDB ID: | retro_mmul_2447 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 9:51590260..51590664(-) | ||
Located in intron of: | ENSMMUG00000023612 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.16694 | ||
Ensembl ID: | ENSMMUG00000017097 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.91 % |
Parental protein coverage: | 85.44 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | AEAVFRKLVTDQNISENWRVDSAATSGYEIGNAPDYRGQNCMKRHGIPMSHVARQITKEDFATFDYILCM |
AEA.FRK.V........WR.D.A.TS.YEIGN.PDYR..NCMK.HG.PM.H.A.QI.KEDF.TFDYI... | |
Retrocopy | AEATFRKGVIIKMSHTFWRIDHAVTSTYEIGNPPDYREENCMKKHGMPMNHMAQQIIKEDFTTFDYISYI |
Parental | DESNLRDLNRKSNQVKTCKAKIELLGSY-DPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKA |
.E.NLRDL.RK...VK.CKAKIELL.SY..P.KQL..E.P..GND.DFETVYQQ.VRCCRAFLEKA | |
Retrocopy | NENNLRDLKRKFPKVKHCKAKIELLRSY<YPPKQLFTENPC*GNDTDFETVYQQRVRCCRAFLEKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .22 RPM | 13 .33 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 19 .04 RPM |
SRP007412_cerebellum | 0 .00 RPM | 8 .72 RPM |
SRP007412_heart | 0 .00 RPM | 8 .66 RPM |
SRP007412_kidney | 0 .00 RPM | 13 .73 RPM |
SRP007412_liver | 0 .00 RPM | 11 .95 RPM |
SRP007412_testis | 0 .00 RPM | 7 .92 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_603 |
Pan troglodytes | retro_ptro_446 |
Gorilla gorilla | retro_ggor_532 |
Pongo abelii | retro_pabe_588 |